ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATTATGTATAAATTAGCAAGACAAGTTAAAAACAGCCTATATTTTT
TCTTTTTTCTTTTTTCCCTAGATCAAGCCCTAAGATACCATTAATTTTTT
TTGTTCAGGAGTAAATCCTCAAGTATGCCTATGTATTGCAGCTCGTGGTC
GTCTTTTCTTGTTGTTTGACTGGAGCAGTAGAAGTGGTACCCTATAAAAA
GAGTCTCAAGATCTCATCAGGATGCTTTATTCACCAGTTTCAGACATCTC
AAATACAGTGCACAAAACACAGAATCTTTATTAGTATATTGATGAAAAGA
GAGAATTAGTACCATGAAGACACACTGAATAAAGAATAGCATGCGAAGAA
ATTAGGCTAATGTTCTGAGGAGCAAAGGTTCGTGGTCAGGAAATTATCCC
TCCAGGCAGCTAGGATGATGAGCTAGATGCAGGAACCTCTGTTGTACCTG
CTGGTTGGCTAACACTAAGCCAACCTTAACTCGAAGTCTTAACAGTTACA
ACATTTCATATTCTTGTTGTAAAACATTTCAGAGTTATTTATTACATCTG
TTGAGTTTTTAGAATAACCTTTGTCCTCGATTTCGAGCACTAATGGGCAT
TTTCGTATCAGTCTGACATCAACATTTGAAATACACCCCAAACCCAATAA
TTCTCAAGATTAAAAAAAGCCCGTTATAGTATGTCCTTCAAAATTAAAGC
CCGGG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGTTTAGGCCTGTACTCTATTTTTAATTGGGTT
ATTTGGTGTTTTGAAGTCTAACTTCTGTGGGAAGCCATTCTGGACTCCCT
GGCCAGCTGGATGGAAATCTGTGCCAGGCAGTAAACAAGCCCATATTTGG
TGGATGGCTCACCTTTAATCCCTGATTGGCTGAGCAAGCCTGCATGGTGA
GGTGATGTGACCTGTGGAGATTGGTTGAGGCCTGGTTGTGGCTTGAGTGG
ATAAAAACACTTGTACCCCGAGGCGCGGGGATTTGAAGAGAGAAGCTGCC
TGAGTAAACAGCTTTAAGAAGAACCAGTGGTTGCGTTTTCCTTGCTGGTC
GAGTTGGATGCAACAGAATTCCTAAGTTCTTTCTGTATTTTGGATATTAA
CCCTCTATCAGATGTAAAATTAGTGGAAGATCTTTTCCTAATCTGTACAC
TGCTGTCCTATTGACTGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTTCA
AGAGGTGCCATTTATCAGTTTTTGATCTTAGAGCTTGAGCCCTTGGCGTT
CTGTTCATGAAATTGGCCTCTGTACATTTTGTTTCAAGGTATGTCCCATT
TTTTCTCTCCTTAATTCCGTATATCCGGGTTTAATTGTGAGCGTCTTTTA
CCCTCTTTTTTTGGCTTTTTTTTTAGGCGTATAAAATGTTTCTTTTTG

Query= MSMg01no368_h05.b1 MSMg01no368_h05.b1 CHROMAT_FILE:
MSMg01no368_h05.b1 PHD_FILE: MSMg01no368_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:53 2005
         (562 letters)



>mm_chr2_63966568_63967530
          Length = 963

 Score = 1058 bits (547), Expect = 0.0
 Identities = 556/559 (99%), Gaps = 1/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacattatgtataaattagcaagacaagttaaaaacagcctatattttttctttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattcacattatgtataaattagcaagacaagttaaaaacagcctatattttttctttt 704

                                                                       
Query: 65  ttcttttttccctagatcaagccctaagataccattaa-ttttttttgttcaggagtaaa 123
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 703 ttcttttttctctagatcaagccctaagataccattaatttttttttgttcaggagtaaa 644

                                                                       
Query: 124 tcctcaagtatgcctatgtattgcagctcgtggtcgtcttttcttgttgtttgactggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcctcaagtatgcctatgtattgcagctcgtggtcgtcttttcttgttgtttgactggag 584

                                                                       
Query: 184 cagtagaagtggtaccctataaaaagagtctcaagatctcatcaggatgctttattcacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagtagaagtggtaccctataaaaagagtctcaagatctcatcaggatgctttattcacc 524

                                                                       
Query: 244 agtttcagacatctcaaatacagtgcacaaaacacagaatctttattagtatattgatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtttcagacatctcaaatacagtgcacaaaacacagaatctttattagtatattgatga 464

                                                                       
Query: 304 aaagagagaattagtaccatgaagacacactgaataaagaatagcatgcgaagaaattag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaagagagaattagtaccatgaagacacactgaataaagaatagcatgcgaagaaattag 404

                                                                       
Query: 364 gctaatgttctgaggagcaaaggttcgtggtcaggaaattatccctccaggcagctagga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gctaatgttctgaggagcaaaggttcgtggtcaggaaattatccctccaggcagctagga 344

                                                                       
Query: 424 tgatgagctagatgcaggaacctctgttgtacctgctggttggctaacactaagccaacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgatgagctagatgcaggaacctctgttgtacctgctggttggctaacactaagccaacc 284

                                                                       
Query: 484 ttaactcgaagtcttaacagttacaacatttcatattcttgttgtaaaacatttcagagt 543
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 283 ttaactcgaagtcttaacagttacaacatttcatatttttgttgtaaaacatttcagagt 224

                              
Query: 544 tatttattacatctgttga 562
           |||||||||||||||||||
Sbjct: 223 tatttattacatctgttga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space:   526056
Effective search space used:   526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)