CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATGCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGNTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGGCCTGGCATGGTGATTCCGCCCGAAGTTCTTTT
ATCCTTGAGAAGACTTTTTGCTTTCCTACGTTTTTT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTGTACATAACAAAATTGATCATGAAAA
TATTCACATGCTAGAATAAAAGTCAGTGTGTGCAACTGAATATAACATTA
GAAGGTATATTTTAAATCTTACTTTAGTGTGATGTTCAGATAAGCAGACC
AGGGAACTGGAGAATGAAGAGGCTTTTCCTCCTGTAATCCTCCCTACAGC
GAGCACCTGCACATTTCGGTGTTAAACACTGAATTTCCTTTAAAACTTTC
TAAGAAATCGTTGCATGCGAATTGCTTTAAGGAACACATTCCTTGGGGTG
TCTTCTTTTCAAAGATCCTTCATAATCTGTCAGCTGCAGACCCAAGCACG
GACTGGCTCCCAACCCAGAAATAGCCAGCAAATGCGGGTTATCCACTTAA
GCAGCCTGTGGCAGTTAGTAGGAGTTAGACTCACTGTTACAGGAAAGAGG
GAAAGTCCAAAGTTGAGCTATAAACTGGGGAAGAGTATACTTATTATAAA
CTATTATTGGTTATAAAGAGGCTATTTACAAATTTGGGTGTTATAAACCT
TAGTTAAACCACTTTTTCAAAGTCAGGATAGGGTGTGATTGCAAGCTGGT
ACAACCACTCTGGAAATCAGTTTGGCAGTTCCTCAGAAAATTGGACATAG
TACTACCCGAAAATCCCGCCATACTCCTCCCGGGCA

Query= MSMg01no368_j16.g1 MSMg01no368_j16.g1 CHROMAT_FILE:
MSMg01no368_j16.g1 PHD_FILE: MSMg01no368_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:05 2005
         (547 letters)



>mm_chr2_13980954_13981906
          Length = 953

 Score =  919 bits (475), Expect = 0.0
 Identities = 531/553 (96%), Gaps = 8/553 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtacataacaaaattgatcatgaaaatattcacatgctagaataaa-agtcagtgt 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 201 ttttgtacataacaaaattgatcatgaaaatattcacatgctagaataaacagtcagcgt 260

                                                                       
Query: 60  gtgcaactgaatataacattagaaggtatattttaaatcttactttagtgtgatgttcag 119
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaactgaatataacattagaaggaatattttaaatcttactttagtgtgatgttcag 320

                                                                       
Query: 120 ataagcaga------ccagggaactggagaatgaagaggcttttcctcctgtaatcctcc 173
           |||||||||      |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ataagcagaccaagtccagggaactggagaatggagaggcttttcctcctgtaatcctcc 380

                                                                       
Query: 174 ctacagcgagcacctgcacatttcggtgttaaacactgaatttcctttaaaactttctaa 233
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ctacagcgagcatctgcacatttcggtgttaaacactgaattgcctttaaaactttctaa 440

                                                                       
Query: 234 gaaatcgttgcatgcgaattgctttaaggaacacattccttggggtgtcttcttttcaaa 293
           ||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||
Sbjct: 441 gaaatcgttgcatgcgaattgctttaaggaacagactccttggagcgtcttcttttcaaa 500

                                                                       
Query: 294 gatccttcataatctgtcagctgcagacccaagcacggactggctcccaacccagaaata 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 501 gatccttcataatctgtcagctgcagacccaagcacggactggctcccaacccagac-ta 559

                                                                       
Query: 354 gccagcaaatgcgggttatccacttaagcagcctgtggcagttagtaggagttagactca 413
           ||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 gccggcagatgcgggatatccacttaaccagcctgtggcagttagtaggagttagactca 619

                                                                       
Query: 414 ctgttacaggaaagagggaaagtccaaagttgagctataaactggggaagagtatactta 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgttacaggaaagagggaaagtccaaagttgagctataaactggggaagagtatactta 679

                                                                       
Query: 474 ttataaactattattggttataaagaggctatttacaaatttgggtgttataaaccttag 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttataaactattattggttataaagaggctatttacaaatttgggtgttataaaccttag 739

                        
Query: 534 ttaaaccactttt 546
           |||||||||||||
Sbjct: 740 ttaaaccactttt 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 953
Length adjustment: 10
Effective length of query: 537
Effective length of database: 943
Effective search space:   506391
Effective search space used:   506391
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)