Query= MSMg01no368_j22.b1 MSMg01no368_j22.b1 CHROMAT_FILE:
MSMg01no368_j22.b1 PHD_FILE: MSMg01no368_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:06 2005
(490 letters)
>mm_chr2_53613030_53613919
Length = 890
Score = 878 bits (454), Expect = 0.0
Identities = 478/486 (98%)
Strand = Plus / Plus
Query: 5 gaattcaaaagaaggacacaatgggatgatataaagtataggtgaacaggccatcagctg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaagaaggagacaatgggatgatataaagtataggtgaacaggccatcagctg 264
Query: 65 gagataatatacattctcattttcttgcatcctcgcagtaaaattttatttatgaatact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagataatatacattctcattttcttgcatcctcgcagtaaaattttatttatgaatact 324
Query: 125 attctggaaacatagtaacaacttttgagttattgaagtaaaatgatttaggggctcatg 184
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attctggaaacatactaacaacttttgagttattgaagtaaaatgatttaggggctcatg 384
Query: 185 atgaatgatgcataagaaataatttaattggctttaaataaatagtggtaggaagctaca 244
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 385 atgaatgatgcataagaaataatttaattggttttaaataaatagtagtaggaagctaca 444
Query: 245 gatgcaaagaggtctatgctgtgccaatataatcatgttctgaagaactcagtttctgag 304
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatgcaaagacgtctatgctatgccaatataatcatgttctgaagaactcagtttctgag 504
Query: 305 taaatacagcattgatgccattttctcgtgatgaaatatatgaagttagacaggagaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaatacagcattgatgccattttctcgtgatgaaatatatgaagttagacaggagaaaa 564
Query: 365 acatataacatgtaacattaaggaaatatcacattaacatttaatgacgaatacagtttt 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 acatataacatgtaacattaaggaaatatcacattaacatttaatgatgaatacagtttt 624
Query: 425 tcctataccactataatcagatggacactccaaaacagaaccagtcttctaatatacaga 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 tcctataccactataatcagatggacactctaaaacagaaccagtcttctaatatacaga 684
Query: 485 tttgac 490
||||||
Sbjct: 685 tttgac 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_j22.g1 MSMg01no368_j22.g1 CHROMAT_FILE:
MSMg01no368_j22.g1 PHD_FILE: MSMg01no368_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:06 2005
(452 letters)
>mm_chr2_53667461_53668311
Length = 851
Score = 804 bits (416), Expect = 0.0
Identities = 440/452 (97%), Gaps = 8/452 (1%)
Strand = Plus / Minus
Query: 1 catgtatgagtaatatatttaataatttaataattccaaccatggtttctgtctgattac 60
|||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 catgtatgagtactatattta-------cataattccaaccatggtttctgtctgattac 627
Query: 61 acttttcccatgctcccaacaccatcacaaattcataacatacttattctttactgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acttttcccatgctcccaacaccatcacaaattcataacatacttattctttactgatgt 567
Query: 121 tacaaatacctttatttttcctttctcatgaagattaatattaagggaaagacagcaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacaaatacctttatttttcctttctcatgaagattaatattaagggaaagacagcaaac 507
Query: 181 cctatattctactttattactatgatagctataaattaatttttaaaaagattagtctat 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 506 cctatattctactttattactatgatagctatgaattaatttttaaaaagattagtctat 447
Query: 241 gttgtaatttcaatagttattctaaagttatttcatacttttaaaattctatttgaataa 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 446 gttgtaatttcaatagttattctgaagttatttcatacttttaaaattctatttgaat-a 388
Query: 301 aatatgagtatatagtgattttccatttatttggctacacatacattatgcctgatcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatatgagtatatagtgattttccatttatttggctacacatacattatgcctgatcttt 328
Query: 361 cctaaggtgttttaaataaaagtatttcaaaatagcacaggttcaaagtactgtatttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctaaggtgttttaaataaaagtatttcaaaatagcacaggttcaaagtactgtatttac 268
Query: 421 acaggctatggctttacaagccagtaacccca 452
||||||||||||||||||||||||||||||||
Sbjct: 267 acaggctatggctttacaagccagtaacccca 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 851
Length adjustment: 10
Effective length of query: 442
Effective length of database: 841
Effective search space: 371722
Effective search space used: 371722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
