Query= MSMg01no368_k10.b1 MSMg01no368_k10.b1 CHROMAT_FILE:
MSMg01no368_k10.b1 PHD_FILE: MSMg01no368_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:09 2005
(583 letters)
>mm_chr2_180412491_180413473
Length = 983
Score = 1062 bits (549), Expect = 0.0
Identities = 568/583 (97%), Gaps = 14/583 (2%)
Strand = Plus / Plus
Query: 1 tccaccaaagacccaatctctcttggccggactacatttcagttattcctgacactccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaccaaagacccaatctctcttggccggactacatttcagttattcctgacactccaa 260
Query: 61 gtatacacacttgatggtttgagagcagctatacctgaagaccacctattaacgtggtct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatacacacttgatggtttgagagcagctatacctgaagaccacctattaacgt----- 315
Query: 121 tcccacgttaactccctaaccatcactctgcagcctgacagctctggtggcttctttcct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ---------aactccctaaccatcactctgcagcctgacagctctggtggcttctttcct 366
Query: 181 cttaaggacgttaggacacattaggcacactcccaacagtgcataaaagtcatgttatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cttaaggacgttaggacacattaggcacactcccaacagtgcataaaagtcatgttatgt 426
Query: 241 aattaaactgatatgtcccataaatgatggctttccctaaccatttgcctactagcatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aattaaactgatatgtcccataaatgatggctttccctaaccatttgcctactagcatct 486
Query: 301 tgaaacaccaagcccccttctattttgggtggtgttaaacagggcaacagttacccattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgaaacaccaagcccccttctattttgggtggtgttaaacagggcaacagttacccattg 546
Query: 361 caactgctcaagggactggcatgtttctctagcccctacaggtaggaacaatagtggtgt 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 547 caactgctcaagggactggcatgtttctctagcccctacaggtaggaataatagtggtgt 606
Query: 421 tggcttagggcagcaatgccagcaacagggattgaccttcatgattgaatagaacaatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tggcttagggcagcaatgccagcaacagggattgaccttcatgattgaatagaacaatga 666
Query: 481 atgaatttgcaaatccttattccattccctaccccaatactgggttttcaaaaacctgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atgaatttgcaaatccttattccattccctaccccaatactgggttttcaaaaacctgtg 726
Query: 541 gcttgggcatactggacaaacgtcctattgagctactgttcca 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gcttgggcatactggacaaacgtcctattgagctactgttcca 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_k10.g1 MSMg01no368_k10.g1 CHROMAT_FILE:
MSMg01no368_k10.g1 PHD_FILE: MSMg01no368_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:09 2005
(495 letters)
>mm_chr2_180583433_180584327
Length = 895
Score = 913 bits (472), Expect = 0.0
Identities = 489/495 (98%)
Strand = Plus / Minus
Query: 1 agctgtttcatacctagacactgatatgcaagcctggctccaggtgccacacatgaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agctgtttcatacctagacactgatatgcaagcctggctccaggtgccacacatgaagag 636
Query: 61 caggcaacaatcagaagaaaacattggccacttgccagggggctccaagccactctaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 635 caggcaacaatcagaagaaaacattggccacttgccagggggctccaagccactccaata 576
Query: 121 actgtccttgctcagtgagaactgtaaatgtgtgattgactcacaagcctgcccaagatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tctgtccttgctcagtgagaactgtaaatgtgtgattgactcacaagcctgcccaagatc 516
Query: 181 ccattaagctggacctggagctgtccagaaggcagtggtctaaatcatggttgcactatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ccattaagctggacctggagctgtccagaaggcagtggtctaaatcatggttgcactatc 456
Query: 241 tatctttctgcctgggtctgctgtgccatggagcactcacctgtccccacacattccctg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tatcttcctgcctgggtctgctgtgccatggagcactcacctgtccccacacattccctg 396
Query: 301 accatctatctgctcaagatattcccagaggctagaagaggccccagtggaaaccataga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 395 accatctatctgctcaagatattcccagaggctagaagaggccccagtggaaaccacaga 336
Query: 361 tgatgaacacatcttaagtaccagtgacagagatatgcttgagggatggttgatgagttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgatgaacacatcttaagtaccagtgacagagatatgcttgagggatggttgatgagttt 276
Query: 421 gtagagtcttaaatgtaagtcataccaaagttaccctcatgcagctaanagacacagaga 480
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 275 gtagagtcttaaatgtaagtcatactaaagttaccctcatgcagctaaaagacacagaga 216
Query: 481 aacttatgtgttggg 495
|||||||||||||||
Sbjct: 215 aacttatgtgttggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
