BAC Information

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BAC

Clone NameMSMg01-368L16
Chromosome2 (Build37)
Map Location 121,430,059 - 121,615,340
singlet/doubletdoublet
Overlap geneFrmd5
Upstream geneLrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368L16.T7 (MSMg01no368_l16.b1)MSMg01-368L16.TJ (MSMg01no368_l16.g1)
ACCAG475885AG475886
length749747
length of high quality
(start - end)		491 (54 - 544)449 (72 - 520)
definitionCHROMAT_FILE: MSMg01no368_l16.b1 PHD_FILE: MSMg01no368_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:15 2005CHROMAT_FILE: MSMg01no368_l16.g1 PHD_FILE: MSMg01no368_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,430,059 - 121,430,549)(121,614,991 - 121,615,340)
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXTATATCCAGAGGAGCGCGG
AAATCATTCTGTAGCTCAGGCTCGCTTCAAACTCAGAGATCTGCCTGCCT
CTGCTTCCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACCACCACCCA
GCAATATCTCCTTATTTTTCAATGCTATGACTCATCGGTCACTTCCCTTT
CTTTCCCATCCCCAAGCCACCAGATACCCAGTTTTAATCAAATCTGCTTC
TTGACATTATCAAACCCATCTCCCTGTTGTTTCTCCTCTGCACCTCTGGA
CGTGTGTGGAATATTCTCTTCTGTCTCTATTTGTTTACATTCTAGCCAGA
CACGAACACTTAGGCAAAACAGCACTGATTCTCAGCAGAATTATTTTCCT
TTATTTGTATATTATTCCATCATTTGCAATATTCTGTTTTGTTCTAGGTC
AACATTCAAGTTCTTAAAACTCTATAAATGCCTTAAGGGCTAGGGCTATT
TTCTCTTGTTACTTCTGTAGTCCCTAAATACATATCTTGACTTAATCCCT
ATGGTGTGTACTATGAATCAAAGGTCCTCCTGGCACTGCTGTGGCCTTGT
TATTTAATGGNCTCAAATGTGCCTGTGGGGTTAGCCCCCCCGAGACTTAA
AATTCCTCACCAAAAACTCAAGGCGGAAGTCAGGGGCCGCTTATCCATCT
GGCGGGGATCCCCCACAAAAATCAAGGGTCCTCTGGCTGCCTCCCCCAC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGGAACCAAACTCAGGTCCTTTGCCAGA
GCAGGATGCGCTCTTAACCACTGGGCCATCTCCCTGGCTTCCTAACTTTG
TTCTTTTAAAAAATGTGTTCTTATTTATGTTGCCTGTGTATGTGTGTCTG
TGTGAGTAAATGTGTGAAGGTACTTGTGGATGTGAGAAGATGGTGTCTGA
TACCTTGGAGCTGGAGTTACAGGCTGTTGTGATTTGCCTGATGTGGGTGC
TGGGACCCGGATTTAGGTCCTTTGTAAGAGCAGCAAGTGCTCTTAACCAC
TGGGCCGTCTTTGCAGCTCCCAACTCTGTTCATTTTCAAGATCCCTTTGG
GCTGTTTTTGCTCTGTGGCATTTCCAAATGAATTTGGGGGGCTCAGATGC
AGCTAGGTGGTACGTGCTTGCCTCGTATGCATAAAGCTCTGGTTTGATCC
CTGGCACCAGAGAGAGAAAGGGGAAACTAGGGAGGGAGAGGAGTCATGGC
AGGGCCCACAGCCCTGGTGTCTATAAATGACTCATAAAGCTCCGTGCTCT
GGAGTGGTGTTGTTGGGCCACACCTTACTTTATTTAATTGGCTGAGCAAA
TAAAAAAGTTCCCTGTGTGTTTAAATATTTATATAACCACTTTTCCTACG
GCTAAAGTTGCCATTTATAACTAACCCTCTTTCACTTTCCCTATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_l16.b1 MSMg01no368_l16.b1 CHROMAT_FILE:
MSMg01no368_l16.b1 PHD_FILE: MSMg01no368_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:15 2005
         (491 letters)



>mm_chr2_121429859_121430749
          Length = 891

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattctgtagctcaggctcgcttcaaactcagagatctgcctgcctctgcttccccaag 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattctgtagatcaggctcgcttcaaactcagagatctgcctgcctctgcttccccaag 260

                                                                       
Query: 61  tgctgggattaaaggtgtgtgccaccaccaccacccagcaatatctccttatttttcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgggattaaaggtgtgtgccaccaccaccacccagcaatatctccttatttttcaat 320

                                                                       
Query: 121 gctatgactcatcggtcacttccctttctttcccatccccaagccaccagatacccagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctatgactcatcggtcacttccctttctttcccatccccaagccaccagatacccagtt 380

                                                                       
Query: 181 ttaatcaaatctgcttcttgacattatcaaacccatctccctgttgtttctcctctgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatcaaatctgcttcttgacattatcaaacccatctccctgttgtttctcctctgcac 440

                                                                       
Query: 241 ctctggacgtgtgtggaatattctcttctgtctctatttgtttacattctagccagacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctggacgtgtgtggaatattctcttctgtctctatttgtttacattctagccagacac 500

                                                                       
Query: 301 gaacacttaggcaaaacagcactgattctcagcagaattattttcctttatttgtatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacacttaggcaaaacagcactgattctcagcagaattattttcctttatttgtatatt 560

                                                                       
Query: 361 attccatcatttgcaatattctgttttgttctaggtcaacattcaagttcttaaaactct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attccatcatttgcaatattctgttttgttctaggtcaacattcaagttcttaaaactct 620

                                                                       
Query: 421 ataaatgccttaagggctagggctattttctcttgttacttctgtagtccctaaatacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaatgccttaagggctagggctattttctcttgttacttctgtagtccctaaatacat 680

                      
Query: 481 atcttgactta 491
           |||||||||||
Sbjct: 681 atcttgactta 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_l16.g1 MSMg01no368_l16.g1 CHROMAT_FILE:
MSMg01no368_l16.g1 PHD_FILE: MSMg01no368_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:15 2005
         (449 letters)



>mm_chr2_121614492_121615340
          Length = 849

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 100 ttatttatgttgcctgtgtatgtgtgtctgtgtgagtaaatgtgtgaaggtacttgtgga 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttatttatgttgcctgtgtatgtgtgtctgtgtgagtaaatgtgtgaaggtacttgtgga 790

                                                                       
Query: 160 tgtgagaagatggtgtctgataccttggagctggagttacaggctgttgtgatttgcctg 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tgtgagaagatggtgtctgataccttggagctggagttacaggctgttgtgatttgcctg 730

                                                                       
Query: 220 atgtgggtgctgggacccggatttaggtcctttgtaagagcagcaagtgctcttaaccac 279
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 729 atgtgggtgctgggacccggatttaggtcctttggaagagcagcaagtgctcttaaccac 670

                                                                       
Query: 280 tgggccgtctttgcagctcccaactctgttcattttcaagatccctttgggctgtttttg 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgggccgtctttgcagctcccaactctgttcattttcaagatccctttgggctgtttttg 610

                                                                       
Query: 340 ctctgtggcatttccaaatgaatttggggggctcagatgcagctaggtggtacgtgcttg 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctctgtggcatttccaaatgaatttggggggctcagatgcagctaggtggtacgtgcttg 550

                                                             
Query: 400 cctcgtatgcataaagctctggtttgatccctggcaccagagagagaaag 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cctcgtatgcataaagctctggtttgatccctggcaccagagagagaaag 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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