Query= MSMg01no368_m06.b1 MSMg01no368_m06.b1 CHROMAT_FILE:
MSMg01no368_m06.b1 PHD_FILE: MSMg01no368_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:18 2005
(539 letters)
>mm_chr2_67953691_67954632
Length = 942
Score = 942 bits (487), Expect = 0.0
Identities = 526/541 (97%), Gaps = 5/541 (0%)
Strand = Plus / Plus
Query: 1 caactctgaaatcagtataactagggtggttagttggtagtttccatgttttggtttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactctgaaatcagtataactagggtggttagttggtagtttccatgttttggtttgtt 260
Query: 61 tcacattaactgtaaccagtggacttcagaaaacaacatacaaagaagaaagatttcttt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacattaactgtaaccagtgtacttcagaaaacaacatacaaagaagaaagatttcttt 320
Query: 121 tggttgataatgtcagaggtttggcttcataattcttggcttatttctcagtctggacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggttgataatgtcagaggtttggcttcataattcttggcttatttctcagtctggacac 380
Query: 181 cccttggatccctgagaccatagttgaaagaattcagacaagacacgtaagcctagtata 240
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 381 ctcttggatccctgagaccatagttgaaagaattcagacaagacatgtaagtctagtata 440
Query: 241 gaggaggtatatatatttgtttgctcagaagagcaaagcctggtctgaagagaggtggca 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggaggtataga-atttgtttgctcagaagagcaaagcctggtctgaagagaggtggca 499
Query: 301 gatgacggtcaaagggaccagagtatccgtctacatcttaggaagagcttacaccatttc 360
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 gatgacggtcagagggaccagagtatccgtctacatcttaggaagagtttacaccatttc 559
Query: 361 tacagtctttagctcatgcagctctaccagaagaactttgtcattggcattcaaagagtg 420
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 tacagtctttagctcatgcagctctaccagaagaactccgtcattggcattcaaagagtg 619
Query: 421 ggcagaacacttggattggctcgt----acaggagcaggcaatcttatcagaaagccttc 476
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 ggcagaacacttggattggctcgttcgtacaggagcaggcaatcttatcagaaagccttc 679
Query: 477 tgaagtgcaatatgcacaaggtttaggattcctagctccaggcttagacaattatctact 536
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgaagtgcaatatgcacaaagtttaggattcctagctccaggcttagacaattatctact 739
Query: 537 a 537
|
Sbjct: 740 a 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 942
Length adjustment: 10
Effective length of query: 529
Effective length of database: 932
Effective search space: 493028
Effective search space used: 493028
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_m06.g1 MSMg01no368_m06.g1 CHROMAT_FILE:
MSMg01no368_m06.g1 PHD_FILE: MSMg01no368_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:18 2005
(580 letters)
>mm_chr2_68090963_68091943
Length = 981
Score = 1085 bits (561), Expect = 0.0
Identities = 576/581 (99%), Gaps = 1/581 (0%)
Strand = Plus / Minus
Query: 1 aattctattaccatttttggacaatgaccttcttgaagactctaggaaaacctagctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aattctattaccatttttggacaatgaccttcttgaagactctaggaaaacctagctctt 722
Query: 61 attcttcaaccacacaggtttaggatccaagaaacagtgtgtaagaatgctattgcccct 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 actcttcaaccacacaggtttaggatccaagaaacagtgtgtaagaatgctattgcccct 662
Query: 121 gaattcattttaagaaagagagacactttcttggtcaccttccaacagattgaccaggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaattcattttaagaaagagagacactttcttggtcaccttccaacagattgaccaggcc 602
Query: 181 cttttctttagacctatgctcttccagttataaaagtcaacattgacacacattgttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cttttctttagacctatgctcttccagttataaaagtcaacattgacacacattgttcag 542
Query: 241 tagcacaggttgttatttggtaacctatgttgtccacctcacagggctggtcttcctgta 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagcacaggctgttatttggtaacctatgttgtccacctcacagggctggtcttcctgta 482
Query: 301 ggactcttgctcggtgaactacaggaggattcaatgggaaaccataccccagaaaacaac 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 481 ggactcttgctcggtgaactacaggaggattcaatgggaaaccatagcccagaaaacaac 422
Query: 361 ccaagatagacacatagctgcagattcctgggcctggctgtgaatccgtctgcccagagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaagatagacacatagctgcagattcctgggcctggctgtgaatccgtctgcccagagc 362
Query: 421 tcactgcagcaaacagtgaaggagctgtctattcatttgacttggaaaaca-tttttttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 tcactgcagcaaacagtgaaggagctgtctattcatttgacttggaaaacattttttttt 302
Query: 480 ccacttaatttcttaacagtaacatgccttcaaccgttagtgagtttatttagccgtgag 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccacttaaattcttaacagtaacatgccttcaaccgttagtgagtttatttagccgtgag 242
Query: 540 atacacattactgaaaatgaggctatcttatacaaagcatt 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atacacattactgaaaatgaggctatcttatacaaagcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
