Query= MSMg01no368_m21.b1 MSMg01no368_m21.b1 CHROMAT_FILE:
MSMg01no368_m21.b1 PHD_FILE: MSMg01no368_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:21 2005
(497 letters)
>mm_chr2_138699543_138700441
Length = 899
Score = 920 bits (476), Expect = 0.0
Identities = 489/494 (98%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 6 tcacttctctttcagacattttcagaattgtgctgaaacaaatgtcttttttatcaagca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcacttctctttcagacattttcagaattgtgctgaaacaaatgtcttttttatcaagca 265
Query: 66 aattataaagttcccaaagggcacctataaataaaattctactacagttacaacacatga 125
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 266 aattattaagttcccaaagggcacctataaataaaattctactacagttgcaacacatga 325
Query: 126 atacattgaagaagaaaggagaaagcttaagaacaaaaagaagacatgagactgtacatc 185
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 326 atacattgaagaagaaaggagaaagcttaagagcaaaaagaagacatgagactgtacatc 385
Query: 186 aaatgaattaatttagataatagaaaatagtaaaataaatatttagttatatatttgaaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaatgaattaatttagataatagaaaatagtaaaataaatatttagttatatatttgaaa 445
Query: 246 agcaacatgaatagtagttgtaaatgaaaaaaaa--tgaccacaccctcagttgcaaggg 303
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 446 agcaacatgaatagtagttgtaaatgaaaaaaaaaatgaccacaccctcagttgcaaggg 505
Query: 304 tcaaattctatgatattggccataatataacactgtagaataataaggaaagtaagaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcaaattctatgatattggccataatataacactgtagaataataaggaaagtaagaatg 565
Query: 364 aaaggaaaacagacacagaaattaacacacgaagtcaaaaactgaactgagccttgtgat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaaggaaaacagacacagaaattaacacacgaagtcaaaaactgaactgagccttgtgat 625
Query: 424 ctaggtgcatacgccaccttctccaaatgacggagcaggagagtcatgacttcagtgact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctaggtgcatacgccaccttctccaaatgacggagcaggagagtcatgacttcagtgact 685
Query: 484 atctggactatagc 497
||||||||||||||
Sbjct: 686 atctggactatagc 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 899
Length adjustment: 10
Effective length of query: 487
Effective length of database: 889
Effective search space: 432943
Effective search space used: 432943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_m21.g1 MSMg01no368_m21.g1 CHROMAT_FILE:
MSMg01no368_m21.g1 PHD_FILE: MSMg01no368_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:21 2005
(462 letters)
>mm_chr2_138860110_138860971
Length = 862
Score = 862 bits (446), Expect = 0.0
Identities = 458/462 (99%)
Strand = Plus / Minus
Query: 1 ttacaagcattacactttagaatcataagcctgccagtactagtgtctctgctagaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ttacaagcattacactttagaatcataagcctgccagtactagtgtctctgctagaagtc 603
Query: 61 aacaccactgcacaaaggaatttcaaaaaaagcatcaaattccaaaacaaagtaatgtag 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aacaccactgcacaacggaatttcaaaaaaagcatcaaattccaaaacaaagtaatgtag 543
Query: 121 caaatgaaaatataaacatagtattcgcttttgagtaatttctgatgacaaacacaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caaatgaaaatataaacatagtattcgcttttgagtaatttctgatgacaaacacaacat 483
Query: 181 gcccagacttcatcaatcataaaaacatcaagaattgctggatgaccttgagggcaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcccagacttcatcaatcataaaaacatcaagaattgctggatgaccttgagggcaccat 423
Query: 241 agaagcaactgttatttatttttcatttttccttattaaaattttagatatatctgtata 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 422 agaagcaactgttatttatttttcatttttccttattaaaattttagatatatctgtaca 363
Query: 301 cctctgcctcattacaaagattgaatatgaaaaccagaactttaaattttacttccttgg 360
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 362 cctctgcctcattacaaagattgaatatgaaaaccagagctttacattttacttccttgg 303
Query: 361 cttttatgtattgtgacccaaagtagattccagaacaattatagtggacacatgcatctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cttttatgtattgtgacccaaagtagattccagaacaattatagtggacacatgcatctt 243
Query: 421 ttctttactctgtgtgagaacttttgataaaattttatttat 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttctttactctgtgtgagaacttttgataaaattttatttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
