BAC Information

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BAC

Clone NameMSMg01-368O09
Chromosome2 (Build37)
Map Location 126,278,586 - 126,464,482
singlet/doubletdoublet
Overlap geneSlc27a2, Hdc, Gabpb1
Upstream geneFbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
Downstream geneUsp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368O09.T7 (MSMg01no368_o09.b1)MSMg01-368O09.TJ (MSMg01no368_o09.g1)
ACCAG476015AG476016
length733737
length of high quality
(start - end)
168 (74 - 241)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no368_o09.b1 PHD_FILE: MSMg01no368_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:28 2005CHROMAT_FILE: MSMg01no368_o09.g1 PHD_FILE: MSMg01no368_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,278,586 - 126,278,753)(126,464,240 - 126,464,482)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAAT
TCATTGTTTTACATATGAAAGAATGTCTCATTGACATTGCTTTTGAAAAC
CAGAAAGATTCTTCTCCTCAAGTTTTTCTTTCAAATATGCAAGATCTTTT
TACATGCTGCAATCACAATGGTGTGACCACAATATGTGATCCCACTGTCT
TCTCCAGTGTGTAAACCAAAAGTCTCCATTCCAATCAAAGTAAGATGCCG
TATCTAAGTGTAGGGAGCATTAATTCTCCCATGTATCGAGAGTCCCACTC
TTCCATTTAAAAAGCATATTATAAACATGGCTCAGTGGGTTACAAGCAGC
CAAAAACGGTAAGCCCCAACAATTGGGGGGTTTTTATTGTTTTGTGGCAA
AAATCTCCCAACTAAAAAATGTGTTACCCCCCCTAATTTGGGAAAACTCT
CCTCCAAATTCTGGGGTCAAAAAAAAATATGTTTATAATCCCCCGGTTAA
AACAGCTAAAAAGCTTGTCCCCCTTTAAAAATTATTTTTTTTTTCTGTAA
CGGTATATATCCCCTTGTTTCTCGTCATTTCTAAAAAACCCCCTCTGGTC
CGCTTTTGGGGTCCCGGCACTAGGGGGCAAAAATAGCCTCTCCCACAATA
AACAGGAGGGGTTTCCCGTCTACTGATTTGCACCTTGTTTTTTTATTGTT
AGCGCTGGCCGTTCAGTCCTTGCCGGGGCCGGG
ATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTACANAAAAAATTCATTTAGAGTATTGCTAACACCATCCTC
CTTCCTCTTCCACACTCATTTGTTGGTGTAACAAAGCACTATCTCTTAGT
TTTTTCTTACATGACTGTAAATAAAATTCCATCTACTGATTTATAATGTC
TCTTATAAAACATGGCTGACCCGGTGCTCTTTCTGTAGACCAGATTGGCC
TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG
GCGTGCGCCACCACTGTCTGGTTTAACAAGATTCTTAAATAACATTGAAG
GACAAATGCAGTATAAACAGCTCTGAGCTGGAAACTGCAAGCTCTTGACC
TCTCTTTGAGCCCCCACTTTATTTCCTCCCAGATTGGAATTAGATGAATA
TCGCTTAGTGTTAGGGTTTTCATGAGGGCAGTAAAGCCAGTATCCTTGGC
TCTGCCCTCGCTGCCTTTGATGTGTTGATGAGTGCCTAGCTGTTCTTGCC
AAAGGCTACGGTTATCATAGAAAGGGGGTTTGTTTTTGTTTGTTAAATGA
ACTATCACATGTTTCTTATTAAAGTACAGTATATTCTCATACTTACTTTA
TCTATTTTTTTTTTACTCTTACGGGCTTATCTCATCATGTATATAAACAT
AATTCTTTTTACCCGCACTCCTTCTGGAAAGCCGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_o09.b1 MSMg01no368_o09.b1 CHROMAT_FILE:
MSMg01no368_o09.b1 PHD_FILE: MSMg01no368_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:28 2005
         (168 letters)



>mm_chr2_126278386_126278953
          Length = 568

 Score =  325 bits (168), Expect = 9e-94
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctcattgacattgcttttgaaaaccagaaagattcttctcctcaagtttttctttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctcattgacattgcttttgaaaaccagaaagattcttctcctcaagtttttctttca 260

                                                                       
Query: 61  aatatgcaagatctttttacatgctgcaatcacaatggtgtgaccacaatatgtgatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgcaagatctttttacatgctgcaatcacaatggtgtgaccacaatatgtgatccc 320

                                                           
Query: 121 actgtcttctccagtgtgtaaaccaaaagtctccattccaatcaaagt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtcttctccagtgtgtaaaccaaaagtctccattccaatcaaagt 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no368_o09.g1 MSMg01no368_o09.g1 CHROMAT_FILE:
MSMg01no368_o09.g1 PHD_FILE: MSMg01no368_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:28 2005
         (244 letters)



>mm_chr2_126464159_126464802
          Length = 644

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttagagtattgctaacaccatcctccttcctcttccacactcatttgttggtgtaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttagagtattgctaacaccatcctccttcctcttccacactcatttgttggtgtaaca 265

                                                                       
Query: 61  aagcactatctcttagttttttcttacatgactgtaaataaaattccatctactgattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagcactatctcttagttttttcttacatgactgtaaataaaattccatctactgattta 205

                                                                       
Query: 121 taatgtctcttataaaacatggctgacccggtgctctttctgtagaccagattggcctcg 180
           |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||
Sbjct: 204 taatgtctcttataaaacatggctgacccggaactcattctgtagaccagattggcctcg 145

                                                                       
Query: 181 aactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccacca 85

              
Query: 241 ctg 243
           |||
Sbjct: 84  ctg 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)