BAC Information

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BAC

Clone NameMSMg01-369B02
Chromosome2 (Build37)
Map Location 95,817,814 - 95,818,014
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369B02.T7 (MSMg01no369_b02.b1)MSMg01-369B02.TJ (MSMg01no369_b02.g1)
ACCAG476145AG476146
length791773
length of high quality
(start - end)
207 (39 - 245)510 (75 - 584)
definitionCHROMAT_FILE: MSMg01no369_b02.b1 PHD_FILE: MSMg01no369_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:41 2005CHROMAT_FILE: MSMg01no369_b02.g1 PHD_FILE: MSMg01no369_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TTGGTGTAAATCAACTACATAGAATGAAGATCAACAAACAAAACCAAATA
TGTCAACTTTGTTTTATGGATAATTTCCTTTCAATTTTTGATCAACAGTA
ACAGAATGAAACAAGCAAAACCATTTGGAACAAATATTTGGCTTCCTGTT
TTTTCTCCATCTAGTGGCTAAATGTGCAAGTGGAAGCTACCTANNNAGTA
GGAAGAGCTTGGCCTTGGGTTCCGNNTTTCTTTTCTTCTTCCTCCTTCTT
CCTTCCTTCCTTCCTTCTTCCTTCCTTCCTTCCTTCTTCCTTCCTTCCTT
TTCTTCCCTTCTTCCTTCCTAATAGAAAAATTTTCCTTTATTTTACATTT
TCCCAAAGGGGTATACCCCCCTTTTTCCCAAAAAAGGGCCCCCCCANNNN
NNAAAGAATTTAAAAAAAAGACCCCCCAGGGAAATTGGAAAGGGGTTTTT
GTGACTCTCCCTTTTTTGAGGAAAGAAAAAAACCCNNNNNNNNNNNNNNN
NNNNNNNNNNNATTAGGATTAAGAAGGTAGANNNNNNNNNNAGAGGATAG
ACACAGGCGNCTTTTNNNNNNAGGGGAGGNTANTTTTTTCCCNTTGAGAG
GCATGTTCCCCAGTTTTATATATTATGTCGATGGATCTCTNCCGTTTATG
GCTTTATGATTTTATCTCNCTNCTTCTCCCCTCCGTNNTTCCTGATATTT
TTTCCCCTTCTNGATTTTACATTCTTTTCTTTGTCTCTTCG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCTTAATTTT
TAATGGGTTATTTGATTTTCTGGAGTCTACCTTCTTGATATATATATATA
TATATATATATCACACACACACACACACACACACATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATACACACACACACATTGGCTATTAATCCCCTATCTGATTTA
GGATAGATAAAGATCCTTTCCCAGTCTGTTGGTACCCTTTTTGTCTTATT
GATGGTATCTTTTTCCTTACAGAAGCTTTGCAACTTTATGAGATCCCATT
TATCGATTCTAGATCTTACAGCACCAGCCATTGCTGTTCTATTCAGGAAT
TTTTCCACTGTGCCCATATTTTGAAGCTTTTCCACACTTTCTCCTCTATA
AGTTTCAGCATTTCTGAATTTATGTGGAGCTCCTTAACTCACTTAGAATT
GACCTTAGTACAAGGAGATAGGAATGGATCTATTCACATTCTTCTACAAG
ATAACTGCTTGTTGCGCCAGCACCATTTGTTGAAAATACTGTCTTTTTTT
CCCCCGGAGGGTTTTAGCTCCTTTGGCAAAGATTATGGGCCCATAGGGGG
GGTGCGGTCTATTTCCGGGGGCTTCAATTCTTATTCCATTGGGCCCATTT
GCTCTGGCCCTAATACAAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_b02.b1 MSMg01no369_b02.b1 CHROMAT_FILE:
MSMg01no369_b02.b1 PHD_FILE: MSMg01no369_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:41 2005
         (207 letters)



>mm_chr2_95817610_95818216
          Length = 607

 Score =  381 bits (197), Expect = e-110
 Identities = 200/201 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattggtgtaaatcaactacatagaatgaagatcaacaaacaaaaccaaatatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaattctattggtgtaaatcaactacatagaatgaagatcaacaaacaaaaccaaatatg 346

                                                                       
Query: 65  tcaactttgttttatggataatttcctttcaatttttgatcaacagtaacagaatgaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcaactttgttttatggataatttcctttcaatttttgatcaacagtaacagaatgaaac 286

                                                                       
Query: 125 aagcaaaaccatttggaacaaatatttggcttcctgttttttctccatctagtggctaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagcaaaaccatttggaacaaatatttggcttcctgttttttctccatctagtggctaaa 226

                                
Query: 185 tgtgcaagtggaagctaccta 205
           ||||||||||||| |||||||
Sbjct: 225 tgtgcaagtggaaactaccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)