Query= MSMg01no369_c13.b1 MSMg01no369_c13.b1 CHROMAT_FILE:
MSMg01no369_c13.b1 PHD_FILE: MSMg01no369_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:48 2005
(506 letters)
>mm_chr2_62495121_62496030
Length = 910
Score = 909 bits (470), Expect = 0.0
Identities = 493/506 (97%), Gaps = 10/506 (1%)
Strand = Plus / Plus
Query: 5 gaattcatattctctgtctctgtctctgtctctctctcaactctctgtctctcacatcaa 64
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 211 gaattcatat------tctctgtctctgtctctctctcaactctctgtctctcacaccaa 264
Query: 65 tatataacctgtttgctcaaatcatgtatttatatttaattaaaaccagatggacacatt 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 tatataacctgtttgctcaaatcatgtatttatatttaattaaaaccagacggacacatt 324
Query: 125 aaaaaaaaaaa----aaaaccaaccagatgcacagttcgatattccataagtgcttacct 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaaaaaaaaaaacaaaaccaaccagatgcacagttcgatattccataagtgcttacct 384
Query: 181 ttgtaatttacctgggttctccacccatttattccatccttacataataatctgctgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtaatttacctgggttctccacccatttattccatccttacataataatctgctgggg 444
Query: 241 tagcatgttgcattttagaagctgtttttctttgtcatttgatgaggtctggttacccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcatgttgcattttagaagctgtttttctttgtcatttgatgaggtctggttacccct 504
Query: 301 gaaggtttactctgtcatcctctgcattgttttgtgtctaggaagctgactctgattagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaggtttactctgtcatcctctgcattgttttgtgtctaggaagctgactctgattagc 564
Query: 361 tgtttctatgaatttcttgttcacctggcttctgattacaaatcattgaccgaaggatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttctatgaatttcttgttcacctggcttctgattacaaatcattgaccgaaggatca 624
Query: 421 gagtcaaggaatagaaaaagatttgagtattctgttaactatagttcataggtttaggtt 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagtcaaggaatagaaaaagatctgagtattctgttaactatagttcataggtttaggtt 684
Query: 481 ttgcattgagagactgaaggtcacca 506
||||||||||||||||||||||||||
Sbjct: 685 ttgcattgagagactgaaggtcacca 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 910
Length adjustment: 10
Effective length of query: 496
Effective length of database: 900
Effective search space: 446400
Effective search space used: 446400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_c13.g1 MSMg01no369_c13.g1 CHROMAT_FILE:
MSMg01no369_c13.g1 PHD_FILE: MSMg01no369_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:48 2005
(509 letters)
>mm_chr2_62672392_62673300
Length = 909
Score = 969 bits (501), Expect = 0.0
Identities = 507/509 (99%)
Strand = Plus / Minus
Query: 1 tttgtttagctctaagttcctattctaagcactgggaattttgaattgataaagaatttt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttgtttagctctaagtccctattctaagcactgggaattttgaattgataaagaatttt 650
Query: 61 ttttctgaattgtaattaccacaggtagtactgcacagataaaacctcttactagttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttttctgaattgtaattaccacaggtagtactgcacagataaaacctcttactagttgag 590
Query: 121 atatgtatgacaatgctatgcattcattatggttgaaagtgaccaaccagtatttgtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atatgtatgacaatgctatgcattcattatggttgaaagtgaccaaccagtatttgtgaa 530
Query: 181 agatgataaaatatgcatgccatttgtgatagcatccctaggatgtactctcaaatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agatgataaaatatgcatgccatttgtgatagcatccctaggatgtactctcaaatttat 470
Query: 241 atggtaatgaagcagactactattggtttttccttcttcctaactatcaaaagtaacgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atggtaatgaagcagactactattggtttttccttcttcctaactatcaaaagtaacgtc 410
Query: 301 agtataatagagttaactgttctattattataattcatattgtactggcatcaccttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agtataatagagttaactgttctattattataattcatattgtactggcatcaccttggt 350
Query: 361 agctttgaatttacttgcaacttctatctatccctttaaaattcttttataagtagtaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agctttgaatttacttgcaacttctatctatccctttaaaattcttttataagtagtaac 290
Query: 421 tactttagatatatatagaaattaagaagaagtggaaacaatgttagcaatattagggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tactttagatatatatagaaattaagaagaagtggaaacaatgttagcaatattagggcc 230
Query: 481 agggccatgcaagtggcatgaatgagtaa 509
|||||||||||||||| ||||||||||||
Sbjct: 229 agggccatgcaagtggtatgaatgagtaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
