BAC Information

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BAC

Clone NameMSMg01-369C17
Chromosome2 (Build37)
Map Location 82,841,206 - 82,841,727
singlet/doubletsinglet
Overlap geneFsip2
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369C17.T7 (MSMg01no369_c17.b1)MSMg01-369C17.TJ (MSMg01no369_c17.g1)
ACCAG476222AG476223
length725724
length of high quality
(start - end)
492 (44 - 535)522 (76 - 597)
definitionCHROMAT_FILE: MSMg01no369_c17.b1 PHD_FILE: MSMg01no369_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:49 2005CHROMAT_FILE: MSMg01no369_c17.g1 PHD_FILE: MSMg01no369_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTCTGAAGTCCACCTTCTTGAG
TTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAA
ATATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCT
TTTGCCTTGCAGAAACTTTGGAGTTTCACTAGGTCCCATTGTCAATTCTC
GATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGT
GCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTG
TCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGGTTTGACCTTAGTA
CAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCA
GTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGG
TTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATT
TCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCA
GTACCATGCAGTCTTTAACACAAATTGCTCTGTATTAAAGTTTTACGTTC
TTGCTGGTTGATCCCCCCGAGGTTTTTTTAACCTTTGATAAGATTTTTTG
CTTTTTTAGGATTATTGCTTTTCCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAGCCAACTGTATTAGGTATTCT
TTAGAATATTATCTATTATTTAAAGAAAATCCTCACATGCTATGATATTC
ATGAACATGGATGACTTTGAACTAATTAGCACAAATCACAAAATGATGAA
TATTATTAAGACTCTACTTGTACTATTCGAAGTCCTGAAGACACAAAGTA
AAATAGTGATTTCCTGGAGGATAAAACAAACAATAAAAATGGGTGTTAGT
GTTTAAGTTCAGAACATGGTAAAGGGGTGAAAGATAGTGATGTTGGTACA
GTCATGTAAATGTTCCTAATGACATGAAACAGTACATTGCAACTTTCTAA
GATGTCCAGTTTTATGTATACTTAATCACATATTTAAAATTGGGAAAATC
AATTTATAAATTATTCTCCTTCCATTTTGAATTTTAGCAACATACTATCT
GTGGTTTGCTTCCATATGAAGAATGGCAGATTGTTGTTAACCAGTAGCTT
CTTCATTTGTTAAATATACACATTAAAAATGGTTCTTTTTATTTTATTTT
AGCGAAGCAGAAGAATTTCTACCAGATGCAAAGGCTAATGCATTAAAAGG
TTGGATTTTTTTTTTAACTTTTAAGAACTGATGAAACAAAAACATGTTGA
TTAATTTGAAAACTTAATAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_c17.g1 MSMg01no369_c17.g1 CHROMAT_FILE:
MSMg01no369_c17.g1 PHD_FILE: MSMg01no369_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:49 2005
         (522 letters)



>mm_chr2_82841006_82841927
          Length = 922

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagccaactgtattaggtattctttagaatattatctattatttaaagaaaatcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagccaactgtattaggtattctttagaatattatctattatttaaagaaaatcctca 260

                                                                       
Query: 61  catgctatgatattcatgaacatggatgactttgaactaattagcacaaatcacaaaatg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 catgctatgatattcatgaacatggatgactttgaactgattagcacaaatcacaaaatg 320

                                                                       
Query: 121 atgaatattattaagactctacttgtactattcgaagtcctgaagacacaaagtaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaatattattaagactctacttgtactattcgaagtcctgaagacacaaagtaaaata 380

                                                                       
Query: 181 gtgatttcctggaggataaaacaaacaataaaaatgggtgttagtgtttaagttcagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatttcctggaggataaaacaaacaataaaaatgggtgttagtgtttaagttcagaac 440

                                                                       
Query: 241 atggtaaaggggtgaaagatagtgatgttggtacagtcatgtaaatgttcctaatgacat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggtcaaggggtgaaagatagtgatgttggtacagtcatgtaaatgttcctaatgacat 500

                                                                       
Query: 301 gaaacagtacattgcaactttctaagatgtccagttttatgtatacttaatcacatattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaacagtacattgcaactttctaagatgtccagttttatgtatacttaatcacatattt 560

                                                                       
Query: 361 aaaattgggaaaatcaatttataaattattctccttccattttgaattttagcaacatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaattgggaaaatcaatttataaattattctccttccattttgaattttagcaacatac 620

                                                                       
Query: 421 tatctgtggtttgcttccatatgaagaatggcagattgttgttaaccagtagcttcttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatctgtggtttgcttccatatgaagaatggcagattgttgttaaccagtagcttcttca 680

                                                     
Query: 481 tttgttaaatatacacattaaaaatggttctttttattttat 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgttaaatatacacattaaaaatggttctttttattttat 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)