Query= MSMg01no369_f01.b1 MSMg01no369_f01.b1 CHROMAT_FILE:
MSMg01no369_f01.b1 PHD_FILE: MSMg01no369_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:00 2005
(500 letters)
>mm_chr2_138417369_138418268
Length = 900
Score = 888 bits (459), Expect = 0.0
Identities = 477/483 (98%)
Strand = Plus / Minus
Query: 5 gaattcataccagtaattttttgttgttgaaattgaaacatccatcccaaaattaatatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattcataccagtaattttttgttgttgaaattgaaacatccatcccaaaattaatatg 424
Query: 65 gaatttcaaatatataattaatgttgaaaaaagatcaaaagttgtactgtcacatttcct 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 423 gaatttcaaatatataattaatgttgaaaaaagatcaagagttgtactgtcacatttcct 364
Query: 125 ggcttcaaaaaatatttcaagtgacagtagttaaacagcacatgaatttatattcataca 184
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 363 gtcttcaaaaaatatttcaagtgacagtagttaaacagcacatgaatttatgttcataca 304
Query: 185 ggcgtgaagacaggcaaggaaagagtacaaatcccagggaaaatgcctttgtgtgcatgg 244
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 303 ggcgtgaagacaggcaaggaaagagtagaaatcccagggaaaatgcttttgtgtgcatgg 244
Query: 245 ccaacctgctctatgtcaaggcttccaagataacttactgagagaagaaaaatgtctgta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccaacctgctctatgtcaaggcttccaagataacttactgagagaagaaaaatgtctgta 184
Query: 305 gaattggtactggaaaaactgaacagccacatgaaagagaatgaggtgagaatgttacta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gaattggtactggaaaaactgaacagccacatgaaagagaatgaggtgagaatgttacta 124
Query: 365 accaacatatttaaaacttaagtccacatggatggaagacctaagtgtggacctaaacct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 accaacatatttaaaacttaagtccacatggatggaagacctaagtgtggacctaaacct 64
Query: 425 atagaaaaactggaagaaaatatcaattaaaaagctccataacaattttttttgacctca 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63 atagaaaaactggaagaaaatatcgattaaaaagctccataacaattttttttgacctca 4
Query: 485 cat 487
|||
Sbjct: 3 cat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_f01.g1 MSMg01no369_f01.g1 CHROMAT_FILE:
MSMg01no369_f01.g1 PHD_FILE: MSMg01no369_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:00 2005
(416 letters)
>mm_chr2_138179592_138180403
Length = 812
Score = 770 bits (398), Expect = 0.0
Identities = 410/416 (98%), Gaps = 4/416 (0%)
Strand = Plus / Plus
Query: 1 tcagtccattcactcagccactaactatttaagtgactattgagaatggcacagctaaga 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtccattcactcagccacta----tttaagtgactattgagaatggcacagctaaga 256
Query: 61 aggctgaaaccaccaaatatcatagttaagtacagctaaacttagcaaagcagccccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aggctgaaaccaccaaatatcatagttaagtacagctaaacttagcaaagcagccccata 316
Query: 121 ttccttgatgcttacaattgggacccttgagtacataccaacaatgtcatctgagggctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttccttgatgcttacaattgggacccttgagtacataccaacaatgtcatctgagggctc 376
Query: 181 accttggcttcctcaaaactactatatccaatcacagccaaggatacacattcatttgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 accttggcttcctcaaaactactatatccaatcacagccaaggatacacattcatttgtg 436
Query: 241 aggaatagcaacttataatgtttattgcatctaaagttaatcaaaacattgatggaattg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 437 aggaatagcaacttataatgtttattgcatctaacgttaatcaaaacattgatggaattg 496
Query: 301 gtccaatttgtagagttcttttccagtagccatggttctatcatcatctctgagtttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtccaatttgtagagttcttttccagtagccatggttctatcatcatctctgagtttaaa 556
Query: 361 gttgatatctactggatggggacacataactgtagtggttaaaaatcgaggagaca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gttgatatctactggatggggacacataactgtagtggttaaaaatcgaggagaca 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 812
Length adjustment: 9
Effective length of query: 407
Effective length of database: 803
Effective search space: 326821
Effective search space used: 326821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
