BAC Information

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BAC

Clone NameMSMg01-369I06
Chromosome2 (Build37)
Map Location 107,143,623 - 107,310,392
singlet/doubletdoublet
Overlap genenone
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369I06.T7 (MSMg01no369_i06.b1)MSMg01-369I06.TJ (MSMg01no369_i06.g1)
ACCAG476483AG476484
length821781
length of high quality
(start - end)		179 (60 - 238)392 (76 - 467)
definitionCHROMAT_FILE: MSMg01no369_i06.b1 PHD_FILE: MSMg01no369_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:15 2005CHROMAT_FILE: MSMg01no369_i06.g1 PHD_FILE: MSMg01no369_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,310,213 - 107,310,392)(107,143,623 - 107,144,012)
sequence
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGGCA
TTTACCAAGTACAGAAAACATTGCATCTCATAATAAAAACACATCCTGGA
CATCCACCTAAAGTGGGGCAGTCCTTAATATTATCAAAATTTAACTCAAA
ATTGTCCTAACTTCAGTTATTTTTAAAAAGGCCATTCAACCAACCCCCAG
AAAGTCTCCAGGCTTTTACTTGAAAACTTAACAGTTGTCAGTACGTTCTA
GCCTAGATTTTCTCACCGTGAAGTACTTCCACAAACAGAGAAGAACCACA
TTTTTTCAAGGTCTTACGGTTATTTTAACACATAATTGCAGCTCTCCATT
TCAGCTGGCAATGCTGGAAATTTCCCTTCTTCCCACTGGATACTATCGTT
CTCAGCGCCGTTCATATGCCTTGTATTTCATGCTGATCATGATCTATATT
TGGCAGCTCGTCTAATTCCCCAGTTATTTAATAAAGTCTATAGTTATTTA
ATTATTATCTTATATATCCCATCTTTTTTTGTTTATAATATTTTTATCAT
TATTCCCAATTTTCTTCGTCATTTTACTAATTTATTATCCCATTTTTTCT
TATACAAATTAATTTTTTTTCTTTTCTCCATAACATCTTTTTGCTCTAAC
CCAATCTCCTTTTTTTCTCCTATTTTCTTTTCCGACTTTGCTTTTTCCCC
TTTTTTTTCCCCCCTTATCTCCCCTTACCTTTTATTGTCTTACACTCTGT
GATTTATATCCTCCTTCCTTCCTCTCTTCTACCTCCTTTTTCTTTTTTAT
TTTTTTTCTCCCCCTCCACCA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATACTTTGTATTTTGATCATATTT
CTTCCTCTTCTATCTCTTTCTGGATGTATCCCCCATTCCATACTGCCCAA
TTTGTGTCCACACTAAAAAATAAAATAAAGTCAAGTAGTGTTACCTATCT
ATCTATTCTTGGCTATATGTCACTCACTGGAATGTGTTTGGCCTACCAGG
AGCAGCCCTTAAAGAAACTCACTGTTCTCCCACAAGTTTTAAATTGAAGG
TTGATTGTTTTAATAATAAACTGAATTTTGTGAAGGTAGCTAGAGATTCT
AAGCCTCACCCTACCTTACTAACTTCAGGCCTATGTCTAGCTAGTTATTT
TAAGAAATTAATATATTTAGACGTTACAATCTATAATTTGAACTGTTTAT
TTGGATTGAGACTTATGCTAGAAATAGTGACTTATTTATTCATTCTTTCT
GAGACTATAATGCAATCCCTCTCTAGTTTTGTACCCCCATTCCTTGATTT
TCAATATTTTATTTAAATTGGTATATTTGGTCTTAAGCATTTTCTCTTTC
TAATTAATTAAAAGGTACTTATGTGTAGATTTACTGACGCTTTGTCCCCT
TTCTTTGCAATATTTGCTTTTTTTCTATTTTTTCACCCGACTTTATTTTT
CTTTCACTTTTACCCTATATTTGGATTTTTGCTCCTTTGTTTTTTTACTC
CCCCCCTCTCTTACTCTTTTTATTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_i06.b1 MSMg01no369_i06.b1 CHROMAT_FILE:
MSMg01no369_i06.b1 PHD_FILE: MSMg01no369_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:15 2005
         (179 letters)



>mm_chr2_107310013_107310592
          Length = 580

 Score =  333 bits (172), Expect = 5e-96
 Identities = 178/180 (98%), Gaps = 1/180 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagaaaacattgcatctcataataaaaacacatcctggacatccacctaaagt-gggg 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 tacagaaaacattgcatctcataataaaaacacatcctggacatccacctaaagtggggg 321

                                                                       
Query: 60  cagtccttaatattatcaaaatttaactcaaaattgtcctaacttcagttatttttaaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagtccttaatattatcaaaatttaactcaaaattgtcctaacttcagttatttttaaaa 261

                                                                       
Query: 120 aggccattcaaccaacccccagaaagtctccaggcttttacttgaaaacttaacagttgt 179
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggccattcaaccaacccccggaaagtctccaggcttttacttgaaaacttaacagttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 580
Length adjustment: 8
Effective length of query: 171
Effective length of database: 572
Effective search space:    97812
Effective search space used:    97812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no369_i06.g1 MSMg01no369_i06.g1 CHROMAT_FILE:
MSMg01no369_i06.g1 PHD_FILE: MSMg01no369_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:15 2005
         (392 letters)



>mm_chr2_107143423_107144214
          Length = 792

 Score =  708 bits (366), Expect = 0.0
 Identities = 384/390 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catactttgtattttgatcatatttcttcctcttctatctctttctggatgtatccccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactttgtattttgatcatatttcttcctcttctatctctttctggatgtatccccca 260

                                                                       
Query: 61  ttccatactgcccaatttgtgtccacactaaaaaataaaataaagtcaagtagtgttacc 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttccatactgcccaatttgtgtccacactaaaaaataaaataaagacaagtagtgttacc 320

                                                                       
Query: 121 tatctatctattcttggctatatgtcactcactggaatgtgtttggcctaccaggagcag 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tatctatctattcttggctatatgtcactcactggaatgtgtttggtctaccaggagcag 380

                                                                       
Query: 181 cccttaaagaaactcactgttctcccacaagttttaaattgaaggttgattgttttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttaaagaaactcactgttctcccacaagttttaaattgaaggttgattgttttaata 440

                                                                       
Query: 241 ataaactgaattttgtgaaggtagctagagattctaagcctcaccctaccttactaactt 300
           |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaactgaagtttgggaaagtagctagagattctaagcctcaccctaccttactaactt 500

                                                                       
Query: 301 caggcctatgtctagctagttattttaagaaattaatatatttagacgttacaatctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 caggcctatgtctagctagttattttaagaaattaatatatttagacattacaatctata 560

                                         
Query: 361 atttgaactgtttatttggattgagactta 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 atttgaactgtttatttggattgagactta 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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