BAC Information

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BAC

Clone NameMSMg01-369L22
Chromosome2 (Build37)
Map Location 136,580,802 - 136,769,558
singlet/doubletdoublet
Overlap geneSnap25, Mkks, 2210009G21Rik
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, LOC668911
Downstream geneJag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369L22.T7 (MSMg01no369_l22.b1)MSMg01-369L22.TJ (MSMg01no369_l22.g1)
ACCAG476656AG476657
length765747
length of high quality
(start - end)		439 (61 - 499)416 (77 - 492)
definitionCHROMAT_FILE: MSMg01no369_l22.b1 PHD_FILE: MSMg01no369_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:33 2005CHROMAT_FILE: MSMg01no369_l22.g1 PHD_FILE: MSMg01no369_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,580,802 - 136,581,240)(136,769,143 - 136,769,558)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATTTTCTGTTCATCAGTGTATCCCTAGTACTCTTAGTAAGTACTTGAGA
ATTGAGAAGGATGGAAAGGAAGAAAGAAGGGTGCTCTGGAACAATTAGTG
TCCTCTTACTTGCATTTGTTTCATGTGAAATGTCAAGGATAGCCACAAAG
TGGGCTGGTCACATTTTAAGGCCCTGGACTCACTCCACTTTGGAATAAGA
CTTGTTTACCTGCACACAATCTTGACAACCTCTAATGACAATTCTAGATG
CTTCTAAATATGGTGCCCTGCTACCCACAAACAAATAGTAATGGTCTAGT
AATTGTGCAAAAAAAATAAATGTAGTAAATCTCAAAATAATTATACCAAG
TACAAAAGCCAGGCAAATCATAGTGCATGCTAAGTCATGTCATTAATACA
TAATCCTAAGAAATGCCAGCAATAGTGACAAAAAGGAGATCAGCAGTCTC
TTGGACATGGGAGGGTATGGAGAATAACAGGTATAATAACAAGGANGATG
TGAAAATGTGGGGGATTAATCCATTGGGTCATTTTCTTTTTTAAAGGGGT
GGGGTTCCCTGAAAATAATGCATGCGGCCAAAATTTTTCAAATTATAACA
AATTTTGGAAATGCTCAAAAATTTCCATAATAATTGTGTGGTATTCTCCC
CACCTCTTTATTTTCTTAAGCTTGAAGGGGTTTGTTTTTTAAAAAATATT
TCTCATAGAATCCCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGCACCTGTTTATATGCTCA
TACCCACACAGTGACCCCTTCCTGTACAAATAATGTGAAACAATGGAAAC
AATTCTTGGAAAATAATGCCCAAGTCAGATATATCTATGTCTACTGGAAT
AATAATATATGACAGAAAAGTGCTGCATATCAGTGGGAAAGAATACATTA
TTTGGAGACAACTACTTCTCTCCAGGAAAACCAGCTCTCCACGTGGCATT
AAATAAAAGTAGATACCAATGTGGTGTCACATACTAAACAGCTGTTCTCC
TGACCTATGGGAATGGGTTCCAGGACCTCCCTTAGCATATTAAGCCCCAC
ACATGACCAGGTCCATGTACAAAATGGATTGTTTTGCACATAATACTTAT
ATCATAGACACAATATGCATGGGCTAGTTTTCTGCATTGTTCAAGAAATG
AGATCAAGAAGAGAATATCTGTAAAACAGAAAATTTTTTCCAACAATTTT
TTCTGTAGTTTGCTAAACCGTACCGAACTTGCAGACCAGGAGAACTGACT
AGATGAACCTTAANGATATCATTTGCANGACTGAAAACGAAGCTCCCCGG
TTAATAACACTGACTGCTCCTCCCAAGGCCCTGAAATCCTTTCCCCTAAA
CCCCCGGTGGGGTAACAACCCCCTTATAAAAAATCTCCAGGCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_l22.b1 MSMg01no369_l22.b1 CHROMAT_FILE:
MSMg01no369_l22.b1 PHD_FILE: MSMg01no369_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:33 2005
         (439 letters)



>mm_chr2_136580602_136581440
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 438/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcagtgtatccctagtactcttagtaagtacttgagaattgagaaggatggaaagga 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcagtgtatccctagtactctttgtaagtacttgagaattgagaaggatggaaagga 260

                                                                       
Query: 61  agaaagaagggtgctctggaacaattagtgtcctcttacttgcatttgtttcatgtgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaagaagggtgctctggaacaattagtgtcctcttacttgcatttgtttcatgtgaaa 320

                                                                       
Query: 121 tgtcaaggatagccacaaagtgggctggtcacattttaaggccctggactcactccactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcaaggatagccacaaagtgggctggtcacattttaaggccctggactcactccactt 380

                                                                       
Query: 181 tggaataagacttgtttacctgcacacaatcttgacaacctctaatgacaattctagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaataagacttgtttacctgcacacaatcttgacaacctctaatgacaattctagatg 440

                                                                       
Query: 241 cttctaaatatggtgccctgctacccacaaacaaatagtaatggtctagtaattgtgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctaaatatggtgccctgctacccacaaacaaatagtaatggtctagtaattgtgcaa 500

                                                                       
Query: 301 aaaaaataaatgtagtaaatctcaaaataattataccaagtacaaaagccaggcaaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaataaatgtagtaaatctcaaaataattataccaagtacaaaagccaggcaaatca 560

                                                                       
Query: 361 tagtgcatgctaagtcatgtcattaatacataatcctaagaaatgccagcaatagtgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtgcatgctaagtcatgtcattaatacataatcctaagaaatgccagcaatagtgaca 620

                              
Query: 421 aaaaggagatcagcagtct 439
           |||||||||||||||||||
Sbjct: 621 aaaaggagatcagcagtct 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no369_l22.g1 MSMg01no369_l22.g1 CHROMAT_FILE:
MSMg01no369_l22.g1 PHD_FILE: MSMg01no369_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:33 2005
         (416 letters)



>mm_chr2_136769077_136769892
          Length = 816

 Score =  789 bits (408), Expect = 0.0
 Identities = 414/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgggcacctgtttatatgctcatacccacacagtgaccccttcctgtacaaataatgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 482 agtgggcacctgtttatatgctcatacccacacagtgaccccttccagtacaaataatgt 423

                                                                       
Query: 61  gaaacaatggaaacaattcttggaaaataatgcccaagtcagatatatctatgtctactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaaacaatggaaacaattcttggaaaataatgcccaagtcagatatatctatgtctactg 363

                                                                       
Query: 121 gaataataatatatgacagaaaagtgctgcatatcagtgggaaagaatacattatttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaataataatatatgacagaaaagtgctgcatatcagtgggaaagaatacattatttgga 303

                                                                       
Query: 181 gacaactacttctctccaggaaaaccagctctccacgtggcattaaataaaagtagatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gacaactacttctctccaggaaaaccagctctccacgtggcattaaataaaagtagatac 243

                                                                       
Query: 241 caatgtggtgtcacatactaaacagctgttctcctgacctatgggaatgggttccaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caatgtggtgtcacatactaaacagctgttctcctgacctatgggaatgggttccaggac 183

                                                                       
Query: 301 ctcccttagcatattaagccccacacatgaccaggtccatgtacaaaatggattgttttg 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 182 ctcccttagcatattaagccccacacatgaccaggtccttgtacaaaatggattgttttg 123

                                                                   
Query: 361 cacataatacttatatcatagacacaatatgcatgggctagttttctgcattgttc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cacataatacttatatcatagacacaatatgcatgggctagttttctgcattgttc 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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