BAC Information

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BAC

Clone NameMSMg01-370C20
Chromosome2 (Build37)
Map Location 56,290,308 - 56,427,253
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370C20.T7 (MSMg01no370_c20.b1)MSMg01-370C20.TJ (MSMg01no370_c20.g1)
ACCAG476986AG476987
length807823
length of high quality
(start - end)		442 (38 - 479)302 (65 - 366)
definitionCHROMAT_FILE: MSMg01no370_c20.b1 PHD_FILE: MSMg01no370_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:08 2005CHROMAT_FILE: MSMg01no370_c20.g1 PHD_FILE: MSMg01no370_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,290,308 - 56,290,745)(56,426,952 - 56,427,253)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
AGCAGGAACAGTCACAGGAATTTACCCAAAGTCAGAAGCTAGAAAGCCAC
AGTTCTGAGATTCAGACTGAGGTACTCTGGCCGCCTAACTAAGAAAGCAC
TGTTGATTTTGTTACCTGTAAAGCTTACTCTGAACAGTGCTAAGGGAGAA
AAATCAGCACATTTTATTTCTAAAAGTCTAAGGATTGAAATGTTTTATGT
TCTTTTTTGTCCTCAAAGGAAAATCAAGTTACGCAAGAAGGCCAGTATAT
AATAGCTTTGTAGATCATATACTTCTCAATCACAAACTTTTCTCAACTCT
TTTTCAAGCCTAGATCATGATGGCATGAGTTGTCAGATTTAGTCACTCCT
CATAAGTTCATTTGATAACCATTTATTTTTCCTCAATACATCCTCCATAG
ATGTTAATAAAATTAAACATGACCTCTAAGAACATTCCTTGTGTTTATGT
TAAGTTAAAATAAAAATAAATTATAACCCGACCAATTGGATCTTAATTTT
GATGGTAAACCCAAGAAACCTGTATACCACCTACAAAAGTAAAAATCTTT
GGTCCTTATCCAGTTGAAATCCTAACCCGGGCTGTAAAATCCCCAATTAA
ACCTTTTTTCTTGGTTTCCCGAAGCCTATAACATACCATTAGCCCCATCC
TCCCCCTGTAACAATCCTTTTTTTTTCTCCTTGGTAACTCCTAAAAACCA
CAAGTCTTTCTGGTTCCGAAAGTCAAAAACATACTACCCTCTTCGACATC
CCTTAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACTTGAGGTTTTGTTTCAGTGAGAATGGTGTGGA
AGTTGAACACACTAGGTTACAATATGCAAAGGACAGGCAAAGTTACAGAT
ACTCTGACAGAACTGGCTTGGATTCATCCAATGGAGTGAGTTGTATATTT
TAAGGACTTTTTAGTGTGGCATTTGAAGAGTCAAATGCTACGTTGACTTA
CACTTATGCATCATTGTATTATAAAAAGATTCCAGAGAAATTTGGCTATG
CCATTTAGCAGGTCTGACGGCCTCTGTGGGAGTGCGAACACTCAAGATGC
TATGTAAAAATGCAGTGTCTCTGAGAACTTGTGTTCTCCTACTGTAGGCT
TACGTCACCAAGATTACGATGCTTTTACAGGATAGGCATCATTTGATCCC
CTCCTAAACATTTTAATATTACTCTCGATTTTCTCTACCTTGCAATTTTT
TTTTTTATTATCTCTTTTTTTTTTCCCCCTGCACACTTCCCTTTTCTCTC
TTTTGAATTTGCCCTTTCTTTTATTTCTTGCTCCCTTCCCCCACCCTTTT
CTTCTTTTTTTCCCTTCTTCGCTCTTTTCTTCTTTACTTTCCTTTTTATC
TCTCCATTTCTATCTTTTCGCTCTTTCTTTCCTCCTTCTCTCTTCTCCTT
TCTCTCTTCTTTTTTTCCCCTTTTTTCTCCTCTTTTCTCTCTTTCCTCCT
CCTTTTCCCCTCTCTCCTCCCTTTTCTCCCCTTTCCTTCTTCTCCTCTCC
CCCGTTTTTTCTCCCTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_c20.b1 MSMg01no370_c20.b1 CHROMAT_FILE:
MSMg01no370_c20.b1 PHD_FILE: MSMg01no370_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:08 2005
         (442 letters)



>mm_chr2_56290104_56290945
          Length = 842

 Score =  832 bits (430), Expect = 0.0
 Identities = 436/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaagcaggaacagtcacaggaatttacccaaagtcagaagctagaaagccaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagcaggaacagtcacaggaatttacccaaagtcagaagctagaaagccaca 264

                                                                       
Query: 65  gttctgagattcagactgaggtactctggccgcctaactaagaaagcactgttgattttg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttctgagattcagattgaggtactctggccgcctaactaagaaagcactgttgattttg 324

                                                                       
Query: 125 ttacctgtaaagcttactctgaacagtgctaagggagaaaaatcagcacattttatttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacctgtaaagcttactctgaacagtgctaagggagaaaaatcagcacattttatttct 384

                                                                       
Query: 185 aaaagtctaaggattgaaatgttttatgttcttttttgtcctcaaaggaaaatcaagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaagtctaaggattgaaatgttttatgttcttttttgtcctcaaaggaaaatcaagtta 444

                                                                       
Query: 245 cgcaagaaggccagtatataatagctttgtagatcatatacttctcaatcacaaactttt 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacaagaaggccagtatataatagctttgtagatcatatacttctcaatcacaaactttt 504

                                                                       
Query: 305 ctcaactctttttcaagcctagatcatgatggcatgagttgtcagatttagtcactcctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcaactctttttcaagcctagatcatgatggcatgagttgtcagatttagtcactcctc 564

                                                                       
Query: 365 ataagttcatttgataaccatttatttttcctcaatacatcctccatagatgttaataaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataagttcatttgataaccatttatttttcctcaatacatcctccatagatgttaataaa 624

                             
Query: 425 attaaacatgacctctaa 442
           ||||||||||||||||||
Sbjct: 625 attaaacatgacctctaa 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_c20.g1 MSMg01no370_c20.g1 CHROMAT_FILE:
MSMg01no370_c20.g1 PHD_FILE: MSMg01no370_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:08 2005
         (302 letters)



>mm_chr2_56426752_56427453
          Length = 702

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttgaggttttgtttcagtgagaatggtgtggaagttgaacacactaggttacaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcacttgaggttttgtttcagtgagaatggtgtggaagttgaacacactaggttacaata 443

                                                                       
Query: 61  tgcaaaggacaggcaaagttacagatactctgacagaactggcttggattcatccaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcaaaggacaggcaaagttacagatactctgacagaactggcttggattcatccaatgg 383

                                                                       
Query: 121 agtgagttgtatattttaaggactttttagtgtggcatttgaagagtcaaatgctacgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtgagttgtatattttaaggactttttagtgtggcatttgaagagtcaaatgctacgtt 323

                                                                       
Query: 181 gacttacacttatgcatcattgtattataaaaagattccagagaaatttggctatgccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gacttacacttatgcatcattgtattataaaaagattccagagaaatttggctatgccat 263

                                                                       
Query: 241 ttagcaggtctgacggcctctgtgggagtgcgaacactcaagatgctatgtaaaaatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttagcaggtctgacggcctctgtgggagtgcgaacactcaagatgctatgtaaaaatgca 203

             
Query: 301 gt 302
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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