BAC Information

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BAC

Clone NameMSMg01-370I04
Chromosome2 (Build37)
Map Location 145,977,081 - 145,977,546
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370I04.T7 (MSMg01no370_i04.b1)MSMg01-370I04.TJ (MSMg01no370_i04.g1)
ACCAG477241AG477242
length754764
length of high quality
(start - end)		469 (41 - 509)441 (74 - 514)
definitionCHROMAT_FILE: MSMg01no370_i04.b1 PHD_FILE: MSMg01no370_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:35 2005CHROMAT_FILE: MSMg01no370_i04.g1 PHD_FILE: MSMg01no370_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTTGACTTAGCCTCTGGCACTGGAATTACAATTAGGAAGTGCCACAAGG
CCCAGCATTTTTACCCAGGTGCCAGTAAAGACGCAGAAAGAGCTCTGCTG
CAGGGTGTCTCTGCTCAGTCACCCTTCCCTCTCACCATAGCATTTCTCTA
GCCCCACCTGCTCCTGAGAATTTTTCATTCACGTGTACTGCCTTGAGTCT
TGACTTTCAAATCCCTCCACCTTGTGTATGAGCACATAACATCAACTTTA
CTTGGACATCCCAGAATAGTAAGCACCATTTCAGAATGGGAGTACACATG
GGTATGCAGACAGAGACCTCCACTATGTGCCTGTCATGGTTTGAAATTGC
TTGGCCCAGGGAGTTGCACTATTTGGAGCTATAGTCTTGTTGGCGTAGGT
GTGTCACTGTGAGCATGGGCTTTAAGATCCTCATCCTAGCTAGGATGGAA
GTCAGTATTCTGCTAGTGGCCTTCAGATGAATATGTAGAACTCTCAGCTC
CTCTTGTACCATGTCTGCCTAGATGTTGTCATGCTCCCACCTTGATGATA
ATGGGCTGAATCTCTGAACCTGTACCAACCCCAATTAACTGTTGTCCTTA
TAACAGCTGGATATCTTTTCAGTTTCTACAGCCCTACTTAATACACACGC
CCTGCGTGTCATATTCCCAATGAGTCCCAACTCCACCGGCCTTTCTACTT
GATT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAAAG
CAATCTACAGGAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTG
GAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCC
CTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAACTCGACAAC
AAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGCCTGTTTAGAT
TCTTCTCTCCACTTACCCAATCCAGGATTTCAGCCAGAGAATGGTACCGC
CCACAGTGGGCGGGGCTTCCTGCTTCACAAAGAACACAATCAGGATAGTG
ACCCCCAGACACTCCCAGTGGCCCATCCAGTGATTCTAAGTTTTGTCATC
TTTAAACTAACCGTCATAATGCTTATGGCTTCATGATAGTGAGATTATCA
ACGTGGAGAATGTCCTTTATCACTATAAAACTTTTTTGCAACATTCAGCG
TTTAGTTCTGAACCCTGCTTTATCAGACGTTAAAATGTTTCTTTCCCAGT
CCAAGGGTTTTTCACCGGCCCTGCCTTGGCCTACGCGTCTGGGGGTGGGT
TTTTCCCCTCTGTTCTCCGGTTGTCTCTACCTTCACCTCCTTTTCTTCTG
TTTTACTCTCTTCTTTCCCCCTTATTTTCTTCTTCCCTCCCCCCTCTTTT
CTCCCTCCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_i04.b1 MSMg01no370_i04.b1 CHROMAT_FILE:
MSMg01no370_i04.b1 PHD_FILE: MSMg01no370_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:35 2005
         (469 letters)



>mm_chr2_145977006_145977874
          Length = 869

 Score =  901 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcttgacttagcctctggcactggaattacaattaggaagtgccacaaggccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaattctcttgacttagcctctggcactggaattacaattaggaagtgccacaaggccc 482

                                                                       
Query: 64  agcatttttacccaggtgccagtaaagacgcagaaagagctctgctgcagggtgtctctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agcatttttacccaggtgccagtaaagacgcagaaagagctctgctgcagggtgtctctg 422

                                                                       
Query: 124 ctcagtcacccttccctctcaccatagcatttctctagccccacctgctcctgagaattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctcagtcacccttccctctcaccatagcatttctctagccccacctgctcctgagaattt 362

                                                                       
Query: 184 ttcattcacgtgtactgccttgagtcttgactttcaaatccctccaccttgtgtatgagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcattcacgtgtactgccttgagtcttgactttcaaatccctccaccttgtgtatgagc 302

                                                                       
Query: 244 acataacatcaactttacttggacatcccagaatagtaagcaccatttcagaatgggagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acataacatcaactttacttggacatcccagaatagtaagcaccatttcagaatgggagt 242

                                                                       
Query: 304 acacatgggtatgcagacagagacctccactatgtgcctgtcatggtttgaaattgcttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acacatgggtatgcagacagagacctccactatgtgcctgtcatggtttgaaattgcttg 182

                                                                       
Query: 364 gcccagggagttgcactatttggagctatagtcttgttggcgtaggtgtgtcactgtgag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcccagggagttgcactatttggagctatagtcttgttggcgtaggtgtgtcactgtgag 122

                                                         
Query: 424 catgggctttaagatcctcatcctagctaggatggaagtcagtatt 469
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catgggctttaagatcctcatcctagctaggatggaagtcagtatt 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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