Query= MSMg01no371_b09.b1 MSMg01no371_b09.b1 CHROMAT_FILE:
MSMg01no371_b09.b1 PHD_FILE: MSMg01no371_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:21 2005
(471 letters)
>mm_chr2_171597657_171598527
Length = 871
Score = 888 bits (459), Expect = 0.0
Identities = 468/471 (99%)
Strand = Plus / Minus
Query: 1 acttctaactgacagggtatcatctccctaagaggaaccttcaagtcgatggattccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acttctaactgacagggtatcatctccctaagaggaaccttcaagtcgatggattccact 612
Query: 61 gtccatttgggtggctgttgcgggaaacagtgggagatttgaggtcagatgttcacctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtccatttgggtggctgttgcgggaaacagtgggagatttgaggtcagatgttcacctga 552
Query: 121 gacgcatgcacagcagtgtgtaagtatccagggcacagttttgctctgcttactcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gacgcatgcacagcagtgtgtaagtatccagggcacagttttgctctgcttactcagaag 492
Query: 181 gccttagtcagtttccagttttagctcctggtcataaacaggtttctctcttaatgatgg 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gccttaatcagtttccagttttagctcctggtcataaacaggtttctctcttaatgatgg 432
Query: 241 aattctccttccttggtctttctggttttttaattaatcaagaaacagtcctggccactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aattctccttccttggtctttctggttttttaattaatcaagaaacagtcctggccactg 372
Query: 301 gacttttccaagcaagtagaggattaatgattctcagcgatgctaccaagctctaacctc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 371 gacttttccaagcaagtagaggattaatgattctcagcgacgctaccaagctctaacctc 312
Query: 361 acaccccaaaccctccggctgtgaaatgaaggcaccattgaacagatatgctaatggcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acaccccaaaccctccggctgtgaaatgaaggcaccattgaacagatatgctaatggcct 252
Query: 421 gtctacattcaagtctcagattctggagctgtaattgcagttgagtgaccc 471
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 gtctacattcaagtctcagattctggatctgtaattgcagttgagtgaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_b09.g1 MSMg01no371_b09.g1 CHROMAT_FILE:
MSMg01no371_b09.g1 PHD_FILE: MSMg01no371_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:21 2005
(539 letters)
>mm_chr2_171432722_171433660
Length = 939
Score = 851 bits (440), Expect = 0.0
Identities = 504/536 (94%), Gaps = 19/536 (3%)
Strand = Plus / Plus
Query: 5 gaattcttaatggggta-cagagaagagctcgcctatgtgtagccactctcatcagcctg 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatgggg-accagagaagagctcgcctatgtgtagccactctcatcagcctg 263
Query: 64 cagagaaagcagaggtgtctccttgcctcgtgtggctgcagtgtctcctcatgttagcag 123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 cagagaaagcagaggtgtctccttgcctcatgtggctgcagtgtctcctcatgttagcag 323
Query: 124 aatacgcactcagaaggtcagcgagtgtattgtgtgcttataaaatactagagaacagca 183
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 aatacgcactcagaaggtcagcgagtgtattgtgtgcttataaaatattagagaacagca 383
Query: 184 cagatagccctagtgtttacattatagagaggaggtagagtatcttgggacttctaatga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagatagccctagtgtttacattatagagaggaggtagagtatcttgggacttctaatga 443
Query: 244 aggaaagaatcagttaataaaaattagacagtgcgggtggtcttagaattgttacaggac 303
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct: 444 aggaaagaatcagttaataaaaattagacagtgcgggtggtcttcgaattgctgcaggac 503
Query: 304 tcagaggagctgtgcatcagagcagtctgcagactttgaagggatgtgcagtgaacgggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagaggagctgtgcatcagagcagtctgcagactttgaagggatgtgcagtgaacgggc 563
Query: 364 ccagtactagaacagacccagtcagtactcacaagcaagggggatttcagcactcaaggg 423
||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 564 ccagt-----------------cagtactcccaagcaagggggatttcagcactcaaggg 606
Query: 424 caatgttaatagtgaacacccacctcactgagtgagtgaagatgtaaagttaggggctta 483
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 607 caatgttaataatgaacacccacctcacttagtgagtgaagatgtaaagttaggggctta 666
Query: 484 gaaccagacggtgctggtgtgaaataattacaggcaaacccagaagccactcacac 539
||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 667 gaatcagacggtgctggtgtaaaataattacacacaaacccagaaaccactcacac 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
