BAC Information

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BAC

Clone NameMSMg01-371C23
Chromosome2 (Build37)
Map Location 56,450,416 - 56,450,830
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C23.T7 (MSMg01no371_c23.b1)MSMg01-371C23.TJ (MSMg01no371_c23.g1)
ACCAG477755AG477756
length745772
length of high quality
(start - end)
415 (82 - 496)419 (52 - 470)
definitionCHROMAT_FILE: MSMg01no371_c23.b1 PHD_FILE: MSMg01no371_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:30 2005CHROMAT_FILE: MSMg01no371_c23.g1 PHD_FILE: MSMg01no371_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAACCCATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACATGACTTGAAATA
TAAGCAGTGTTGCTAATTTAAAGTTGTCACATTTAAAATAATAGAATTCT
CGGATTTAAGCACACCCTTTTTGAATTACTATATTTTAAAAAGTATAATA
GTACTGTTTTCTAAATGCTGAATAGTTGTACCTATCACCTGACAAAACTA
CATTTCCTCTACCCTCTTCTCATTTTTATTCTCACCTTTTCTTATAGACA
TAAACATTACTTCAGAAATTAACATTGAAATGTAATAAATAATTTTTAAT
ATTGAGAACTTTGTTTTGCTGCAAGAGAAGTTTTGCAAAACTAGTATGAC
TTATATGAAGATTTTCTAAGAATCTTAAGAAAAACAGACCTTTAGATGAG
ACCAAAATTTACAACATGATAATCTGGTACTCTGCTTTGCTGACTACATA
GGCAATTCTGGGGTTCATCAAATATGGATTATCTGTAGAATGACTTGTGA
GGAAATCAAAAATCTAATATATATGATTTTACTAATGCCATGAGGTTACA
TCTTTTCTTTCCACAAACGGTATAATGGAAATGTGCCCGCCCAGGAAGAA
AAGAATCTCTCCCAAATGCTTTGTAAAAATGTGGGCGTTGCTAACAACAA
AAGAATTGGCCTTTTTATTCTTTTCAGGAAAAAAAAATGAAGTTG
NNNAAAATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGA
TCCGCGGAATTCTCAACCAAGGAATCTCAATGGCTGAGAAACACTTAAAG
AAATGTTCAACATCCTTAGTCATCAGGGAAATACAAATCAAAATGACCCT
GAAATTCTACCTCACACCAGTCAAAATGGCTAAGATAAATAACAAAAGTG
TTTAGCAAATTGTATCTTATATTTTGGGTATCCTAAGTTTCTGGGCTAAT
ATCCACTTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGTT
ACCTCACCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTC
ATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTA
TCACATTTTCTGTATTCATTCCTCTGTTGAGGGGCATCTGGGCCAGGGCC
AAAAAGGGGGAGTGGGTGGGTAAGGGGATTGTGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNNNNNNNNNNNNNNNN
NNNNNTTNNNNNTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c23.b1 MSMg01no371_c23.b1 CHROMAT_FILE:
MSMg01no371_c23.b1 PHD_FILE: MSMg01no371_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:30 2005
         (415 letters)



>mm_chr2_56450380_56451194
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagacatgacttgaaatataagcagtgttgctaatttaaagttgtcacatttaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttagacatgacttgaaatataagcagtgttgctaatttaaagttgtcacatttaaaataa 392

                                                                       
Query: 61  tagaattctcggatttaagcacaccctttttgaattactatattttaaaaagtataatag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagaattctcggatttaaacacaccctttttgaattactatattttaaaaagtataatag 332

                                                                       
Query: 121 tactgttttctaaatgctgaatagttgtacctatcacctgacaaaactacatttcctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tactgttttctaaatgctgaatagttgtacctatcacctgacaaaactacatttcctcta 272

                                                                       
Query: 181 ccctcttctcatttttattctcaccttttcttatagacataaacattacttcagaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccctcttctcatttttattctcaccttttcttatagacataaacattacttcagaaatta 212

                                                                       
Query: 241 acattgaaatgtaataaataatttttaatattgagaactttgttttgctgcaagagaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 acattgaaatgtaataaataatttttaatattgagaactttgttttgctgcaagagaagt 152

                                                                       
Query: 301 tttgcaaaactagtatgacttatatgaagattttctaagaatcttaagaaaaacagacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tttgcaaaactagtatgacttatatgaagattttctaagaatcttaagaaaaacagacct 92

                                                                  
Query: 361 ttagatgagaccaaaatttacaacatgataatctggtactctgctttgctgacta 415
           ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 91  ttagatgagaccaaaatttacaacatgataatctgatactctgctttgccgacta 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)