BAC Information

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BAC

Clone NameMSMg01-371E24
Chromosome2 (Build37)
Map Location 91,052,371 - 91,101,181
singlet/doubletdoublet
Overlap geneDdb2, Pacsin3
Upstream geneOlfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2
Downstream geneZfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371E24.T7 (MSMg01no371_e24.b1)MSMg01-371E24.TJ (MSMg01no371_e24.g1)
ACCAG477852AG477853
length742759
length of high quality
(start - end)		625 (76 - 700)556 (49 - 604)
definitionCHROMAT_FILE: MSMg01no371_e24.b1 PHD_FILE: MSMg01no371_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:42 2005CHROMAT_FILE: MSMg01no371_e24.g1 PHD_FILE: MSMg01no371_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,052,371 - 91,052,995)(91,100,721 - 91,101,181)
sequence
AACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCCTCCACTGCAGCCTCGGATAGG
GCCAGGCTTAGACAGTTTGAGATACAGTTGCTTTTACTCACCCATAGTAG
AGGCCAGTGTGTCTCCCATAGGATTGAACTCATTGAGCTACAAAAGTAAG
AGTATCGGTGTGAAGCTGGGTTGAAGGCAGTACAGAGGCAGTAAATGGGG
ACTACTTCTAATGAGAAATTCCCTGCTTCCTCCCATCACTGTTTGGGGGC
CCAAGTCTCACCGAAGTAATACCGGAGTATCCTGGATCATAGAGCTGACA
CATCATCTTCCCTGAGCTTCCATCAAACACATCTATTGTCCTTAGTTCAT
AGGGAACACAACTTTTAAGATTAGGATCTGGGTATCGGCCCACAACAATG
AGGTTGTGCCGTGAATGCCAGGTCGCCTAGGAAACAGAGAGGTCAGTCAG
AATTTAAAGTATTTTTTGGAGTTAGGGACGAGGACTTGGTTGGTATAAGT
ACACTTGAGTTTGGATCCCCAGCATTCCTATACAAATCTTGTCCTGATGC
ACCTGAATTCCAGCTGGGGGTGGAGACAGGATGCCCAGAACTTGCTAGCT
ATCTACTCCAGCCAAATCAGTGGGTTCCAGGTACAGTGAGAAACCGTTTC
AAAAATAAGATGTATAACAACTGAGAAAGACACCTGCTGTCA

NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTACTCTGCCCTGACATGAGCGATCTCATTAATCTTTGACT
TCACTACTACTATGGGGACACTGCCATTGCTAACGTGGACCGGGCAAAAA
TAAACAACAACAAAGCAAAACAAACAACAACAAAAAACTAAACCTAGAGA
CGTCAGGTTAACTTGTCCAAAGCGGAGTAAAACCATGTCTGCTGCACAAG
CTCTGTAATGCCTAGGATCTTCCTACCCAGATAAAAGACCTACACTGCAC
ATTTAGCTTTTCCTAGCTGTGACTTCAGGCAAGTCCCTTCTCTGACCTTC
AGTTCTGTTCTAGAAAACAGGTGCAGTAGGAAGATAGCTCCCTCTTGCCC
TGCATGCTTGAGGTCTTAAATTCCATCCCCAGGCCCCACAAAGCCTCAGG
AAGCTGCCCTGAGGGTCCCACCCTCATAACCTTTGAGGCCTTTGGTAGGC
CTGTATACTGGCTCACCCTTCTCCACAGCACCCCTCCACTTGCGGGCCCA
GTCAGCCAGCTGCTGGGCGTAGGCCTTCTCAATGCGGGCACGTTCTTGGA
AGCAGCTAAACAGGTCCCCACACAGCCTGTGGCCATCCTCAACCCTCTGC
ACCGTCCGTCTGTAGTTGCCAGCCTGGAACACGAGAAAAGAGATGGCTTA
TGAAGCCCCCTTTCCGCTGGGGCTGAAACTTAGCTACTCCTGGAAAGTGG
GTGGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_e24.b1 MSMg01no371_e24.b1 CHROMAT_FILE:
MSMg01no371_e24.b1 PHD_FILE: MSMg01no371_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:42 2005
         (625 letters)



>mm_chr2_91052171_91053195
          Length = 1025

 Score = 1208 bits (625), Expect = 0.0
 Identities = 625/625 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctccactgcagcctcggatagggccaggcttagacagtttgagatacagttgctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctccactgcagcctcggatagggccaggcttagacagtttgagatacagttgctttt 260

                                                                       
Query: 61  actcacccatagtagaggccagtgtgtctcccataggattgaactcattgagctacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcacccatagtagaggccagtgtgtctcccataggattgaactcattgagctacaaaa 320

                                                                       
Query: 121 gtaagagtatcggtgtgaagctgggttgaaggcagtacagaggcagtaaatggggactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagagtatcggtgtgaagctgggttgaaggcagtacagaggcagtaaatggggactac 380

                                                                       
Query: 181 ttctaatgagaaattccctgcttcctcccatcactgtttgggggcccaagtctcaccgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaatgagaaattccctgcttcctcccatcactgtttgggggcccaagtctcaccgaa 440

                                                                       
Query: 241 gtaataccggagtatcctggatcatagagctgacacatcatcttccctgagcttccatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaataccggagtatcctggatcatagagctgacacatcatcttccctgagcttccatca 500

                                                                       
Query: 301 aacacatctattgtccttagttcatagggaacacaacttttaagattaggatctgggtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacacatctattgtccttagttcatagggaacacaacttttaagattaggatctgggtat 560

                                                                       
Query: 361 cggcccacaacaatgaggttgtgccgtgaatgccaggtcgcctaggaaacagagaggtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggcccacaacaatgaggttgtgccgtgaatgccaggtcgcctaggaaacagagaggtca 620

                                                                       
Query: 421 gtcagaatttaaagtattttttggagttagggacgaggacttggttggtataagtacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcagaatttaaagtattttttggagttagggacgaggacttggttggtataagtacact 680

                                                                       
Query: 481 tgagtttggatccccagcattcctatacaaatcttgtcctgatgcacctgaattccagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagtttggatccccagcattcctatacaaatcttgtcctgatgcacctgaattccagct 740

                                                                       
Query: 541 gggggtggagacaggatgcccagaacttgctagctatctactccagccaaatcagtgggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggggtggagacaggatgcccagaacttgctagctatctactccagccaaatcagtgggt 800

                                    
Query: 601 tccaggtacagtgagaaaccgtttc 625
           |||||||||||||||||||||||||
Sbjct: 801 tccaggtacagtgagaaaccgtttc 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_e24.g1 MSMg01no371_e24.g1 CHROMAT_FILE:
MSMg01no371_e24.g1 PHD_FILE: MSMg01no371_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:42 2005
         (556 letters)



>mm_chr2_91100721_91101676
          Length = 956

 Score =  853 bits (441), Expect = 0.0
 Identities = 456/461 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctactctgccctgacatgagcgatctcattaatctttgacttcactactacta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaattccctactctgctctgacatgagcgatctcattaatctttgacttcactactacta 402

                                                                       
Query: 65  tggggacactgccattgctaacgtggaccgggcaaaaataaacaacaacaaagcaaaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tggggacactgccattgctaacgtggaccgggcaaaaataaacaacaacaaagcaaaaca 342

                                                                       
Query: 125 aacaacaacaaaaaactaaacctagagacgtcaggttaacttgtccaaagcggagtaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aacaacaacaaaaaactaaacctagagacgtcaggttaacttgtccaaagcggagtaaaa 282

                                                                       
Query: 185 ccatgtctgctgcacaagctctgtaatgcctaggatcttcctacccagataaaagaccta 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 281 ccatgtctgctgcacaagctctgtaatgcccaggatcttcctacccagataaaagaccta 222

                                                                       
Query: 245 cactgcacatttagcttttcctagctgtgacttcaggcaagtcccttctctgaccttcag 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cactccacatttagcttttcctagctgtgacttcaggcaagtcccttctctgaccttcag 162

                                                                       
Query: 305 ttctgttctagaaaacaggtgcagtaggaagatagctccctcttgccctgcatgcttgag 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttctgttctagaaaacaggtggagtaggaagatagctccctcttgccctgcatgcttgag 102

                                                                       
Query: 365 gtcttaaattccatccccaggccccacaaagcctcaggaagctgccctgagggtcccacc 424
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gtcttaaattccatccccaagccccacaaagcctcaggaagctgccctgagggtcccacc 42

                                                    
Query: 425 ctcataacctttgaggcctttggtaggcctgtatactggct 465
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  ctcataacctttgaggcctttggtaggcctgtatactggct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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