BAC Information

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BAC

Clone NameMSMg01-371I07
Chromosome2 (Build37)
Map Location 47,561,735 - 47,562,100
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371I07.T7 (MSMg01no371_i07.b1)MSMg01-371I07.TJ (MSMg01no371_i07.g1)
ACCAG478005AG478006
length763768
length of high quality
(start - end)		587 (73 - 659)545 (41 - 585)
definitionCHROMAT_FILE: MSMg01no371_i07.b1 PHD_FILE: MSMg01no371_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:59 2005CHROMAT_FILE: MSMg01no371_i07.g1 PHD_FILE: MSMg01no371_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTGTGAGTCCATATGAGCCTAGACTG
TGGTTTTTTTTAATCATTTTTTTTTCTGCTCTAATCTTCTTTGTTATGGG
TCTACTTAGGTTGTTGGTCTCTTATTAGTTTAATTTTGGTAGACTGAATG
AATTAAGAAATTCATTCACTTCTTTAGACTCTGTAACTTTATGGAATACA
GGTTTGTAATGGAGTCCCTAACAATTTCCTGTACTTTGTGGTCTGTTATA
ATGTTTCAGTTGTCTGATTCTGATTCTGTTTAATTTGAGCCATTGCTTTC
TTTCTTTTGATTAATAGGTCCAAAAGTTTTTTGATCTTTTAATCTTGCCA
GAAACCCTTATCTTTTATTTCATTATTTTCTGCTTTTGAATTTATTATTT
TTGCTGTCTATTGTGCTAGATTTTGGGTTGGTCTTTTTTTTTTCAAAAAA
TATGCAATTGCATCATTAATTCCTTTATCCATGCATATTCTAATTTTTAA
ATGTAGGTGCTTAAGTCTATAAGCATCCCTGTGAGAACTAACTTTAATAT
ATTCCAAAGGTTTGGTTGTGTTGCATTTTTTATTTTCATTTAANTCCACA
CATCTTTTCATTTCTTTCTTGATTTCTTCCTCAATTCATTCATCATTCAG
GAATAAGTTGATTATTATCCACTTGTGTAACAATGGGGAGAAATTTGGTG
GGTCTCCGGTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATTAGACCTTTACCGAAGACCTAATTCCAGTTCTTCACAAACTATTCCA
CAAAATAGAAATGGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAA
TTACTTTGATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTC
AGACCAATTTCCCTTATGAATATCGATGCAAAAATCCTCAATAAAGTTCT
TGCTAACCGAATCCAAGAACACATCAAAACAATCACCCATCCTGACCAAG
TAGGTTTCATCCCAAGGATGCAGGGATGGTTCAATATAAGGAAATCCATC
AATGTAATCAATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT
CTCCTTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCATGA
TAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTTAGCGTGATT
AAAACAATCTACAGTAAACCAATAGCCAACATCAAAGTAAATGGTGAGAA
GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCT
TGCCCTACCTATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGA
CAACAAAAGGAGATCAACGGGATACAAATTGGGAAAAGAAGAAGTCAAAA
TATCACTTTTTGCAGATGATATGAAAGTATATATAAGTGGACCTAAAAAT
TTCCCCCGAGAAACTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_i07.b1 MSMg01no371_i07.b1 CHROMAT_FILE:
MSMg01no371_i07.b1 PHD_FILE: MSMg01no371_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:59 2005
         (587 letters)



>mm_chr2_47561114_47562100
          Length = 987

 Score =  671 bits (347), Expect = 0.0
 Identities = 360/366 (98%), Gaps = 3/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 225 tataatgtttcagttgtctgattctgattctgtttaatttgagccattgctttctttctt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 tataatgtttcagttgtctgattctgattctgtttaatttgagccattgctttctttctt 928

                                                                       
Query: 285 ttgattaataggtccaaaagttttttgatcttttaatcttgccagaaacccttatctttt 344
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 927 ttgattaataggtccaaaagttttttgatcttttaatcttgccagaaacccttatcttct 868

                                                                       
Query: 345 atttcattattttctgcttttgaatttattatttttgctgtctattgtgctagattttgg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 atttcattattttctgcttttgaatttattatttttgctgtctattgtgctagattttgg 808

                                                                       
Query: 405 gttggtc---ttttttttttcaaaaaatatgcaattgcatcattaattcctttatccatg 461
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gttggtctttttttttttttcaaaaaatatgcaattgcatcattaattcctttatccatg 748

                                                                       
Query: 462 catattctaatttttaaatgtaggtgcttaagtctataagcatccctgtgagaactaact 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 catattctaatttttaaatgtaggtgcttaagtctataagcatccctgtgagaactaact 688

                                                                       
Query: 522 ttaatatattccaaaggtttggttgtgttgcattttttattttcatttaantccacacat 581
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 687 ttaatatattccaaaggtttggttgtgttgcattttttattttcatttagttccacacat 628

                 
Query: 582 cttttc 587
           ||||||
Sbjct: 627 cttttc 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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