BAC Information

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BAC

Clone NameMSMg01-371M08
Chromosome2 (Build37)
Map Location 156,172,022 - 156,172,398
singlet/doubletsinglet
Overlap geneLOC628707
Upstream geneCdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394
Downstream geneLOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371M08.T7 (MSMg01no371_m08.b1)MSMg01-371M08.TJ (MSMg01no371_m08.g1)
ACCAG478194AG478195
length764803
length of high quality
(start - end)		445 (76 - 520)375 (51 - 425)
definitionCHROMAT_FILE: MSMg01no371_m08.b1 PHD_FILE: MSMg01no371_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:20 2005CHROMAT_FILE: MSMg01no371_m08.g1 PHD_FILE: MSMg01no371_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCGGGACGAGAAAAAAAAAAAAACTC
GGGACTGGCGCAGGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCG
CGGTGATAGAGGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTG
TGAATTCAGAACTTTTCAGCTGGGGAACGGCGGTAACCCGTAAGTATAGC
TTTACGAGGTAAGTCTGATCTTGAACTTTCTAAGGAAATTCAAGACAGTC
TATCAGAAGTAAAGTGGAAAATAGCTTTATAAGGTATGTTTGGCCTTGAA
CTTTCTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGT
GGTTAAGGCAGGGCGGATTCTGGATGAAGTTCAGGACAATCTATCAGAAG
TAAAGCGGGGAGAGAGAATAAGAGCAAAGAGAAAATATGGTACACAAAAT
AAGTATACAGGCCTTTCCAAGGGTCTTGAACCTGAGGAAAAGTTTAGGTC
AGGTAAGAATACCTGGGGAGAGATTAGAAGGAACGAAAAGGAATATGAAA
AGAAAAAAGATCCATTATAAGAAACCCGTTCTTAATAATTCCTGAACCCT
AAGAAAAGGCCTTTAATGGTCCCGGGAGGTGGCTTTCTCCATCCTGGGGT
AATCTCCTGTGGCTATATTGGTCTAAGGCGGTTTCTTTTGTTTTCTATTA
TGTCCTTCATTTTG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGG
AATTCCAAAAACAATTTACAAAGAAAAGAAAAGAAAAGAAAAAACAACAA
AAAAAAATCCCAAAACCAAAACCAAAAAAAAAAAAACAAAAACAAAAAAA
CAGACCTATGATTCTGGCTGGAAGGTGGGGTAGGCATAGGTGGAACTGGG
TGGCTTTAGGACAGTACAGTTATTATATATCACACTAGGTTGATACTTGC
CAATACCCATAGGCTGTCCAACACCAGGAGGGTGTCCTGGAATGCGCTAT
ATAGCCCAGGCTGGCCTCAGTTTTGAATCAATCTTCCGATGTCAGTGTCT
CAGGTGCTTGGACTGCAAGAGCACAGACATACACCACTGCACCTGGATGA
GACTCTGATTTATTGGGGTTTTTTGCTTTTGTTTTTGTCTCGCCTTGCTT
TCCTTCTCTCTTATTACATCCTTATCTCTTTTTTTTCTTTTTCCCTCTTC
TCCCCTTTCTTTTTCCTTTCTAACTCTATATTCCCTACCACTTTCATTCT
CTCTTACTTTTTATTTCCTTCTCCTCTTCCTTATCCCCTCTATATCCCTT
TCATTCACAATTCCTATCCACTCTTTCTCTCCTGCCTTCTCTTTCCTTAC
TTCCCTTCTCTATTTCTTTTCTCTTGCTCCTTTATTCCTCTTCTTCTTTT
TCTCATGATAATCTTTTTTTCATTCTCTTCTTAATTCCTCCACTTTTTTA
CTCCTTCTCCTCATCCTTTTTTTTTCGCCTTCTTCCTCTTCTCTTTATAT
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_m08.g1 MSMg01no371_m08.g1 CHROMAT_FILE:
MSMg01no371_m08.g1 PHD_FILE: MSMg01no371_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:20 2005
         (375 letters)



>mm_chr2_156171869_156172643
          Length = 775

 Score =  663 bits (343), Expect = 0.0
 Identities = 369/381 (96%), Gaps = 10/381 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccaaaaac--aatttacaaagaaaagaaaagaaaagaaaaaac---aacaaaaaaa 55
           ||||||||||||  ||   | ||||||||||||||||||||||||||   ||||||||||
Sbjct: 530 aattccaaaaacaaaa---aaaaagaaaagaaaagaaaagaaaaaacaaaaacaaaaaaa 474

                                                                       
Query: 56  aatcccaaaaccaaaacc-aaaaaaaaaaaaacaaaaacaaaaaaacagacctatgattc 114
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aa-cccaaaaccaaaaccaaaaaaaaaaaaaacaaaaacaaaaaaacagacctatgattc 415

                                                                       
Query: 115 tggctggaaggtggggtaggcataggtggaactgggtggctttaggacagtacagttatt 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tggctggaaggtggggtaggcataggtggaactgggtggctttaggacagtacagttatt 355

                                                                       
Query: 175 atatatcacactaggttgatacttgccaatacccataggctgtccaacaccaggagggtg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atatatcacactaggttgatacttgccaatacccataggctgtccaacaccaggagggtg 295

                                                                       
Query: 235 tcctggaatgcgctatatagcccaggctggcctcagttttgaatcaatcttccgatgtca 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 294 tcctggaatgcgctatatagcccaggctggcctcagttttgaatcaatcttctgatgtca 235

                                                                       
Query: 295 gtgtctcaggtgcttggactgcaagagcacagacatacaccactgcacctggatgagact 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gtgtctcaggtgcttggactgcaagagcacagacatacaccactgcacctggatgagact 175

                                
Query: 355 ctgatttattggggttttttg 375
           |||||||||||||||||||||
Sbjct: 174 ctgatttattggggttttttg 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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