Query= MSMg01no372_g03.b1 MSMg01no372_g03.b1 CHROMAT_FILE:
MSMg01no372_g03.b1 PHD_FILE: MSMg01no372_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:07 2005
(159 letters)
>mm_chr2_62533526_62534084
Length = 559
Score = 277 bits (143), Expect = 3e-79
Identities = 152/155 (98%)
Strand = Plus / Minus
Query: 5 gaattctagtatatcgctagcaagctccactaagcggattttttttaaaaaagcattaaa 64
||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 359 gaattctagtagaccgctagcaagctccactaagcggatttttttttaaaaagcattaaa 300
Query: 65 cctgaatttaaagaaactaaaaaattttactcattgccccatcagaaccatggcagtaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cctgaatttaaagaaactaaaaaattttactcattgccccatcagaaccatggcagtaaa 240
Query: 125 tgacggaaatatttattgttcgctaaactttgctg 159
|||||||||||||||||||||||||||||||||||
Sbjct: 239 tgacggaaatatttattgttcgctaaactttgctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space: 83201
Effective search space used: 83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no372_g03.g1 MSMg01no372_g03.g1 CHROMAT_FILE:
MSMg01no372_g03.g1 PHD_FILE: MSMg01no372_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:07 2005
(511 letters)
>mm_chr2_62484246_62485156
Length = 911
Score = 901 bits (466), Expect = 0.0
Identities = 504/524 (96%), Gaps = 14/524 (2%)
Strand = Plus / Plus
Query: 1 ttccttgtgttgagaaagcaagcggtactctgcactattttatttaaggatacttttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttccttgtgttgagaaagcaagcggtactctgcactattttatttaaggatacttttgtc 248
Query: 61 ttcaccgctgggtgccgcttaaaagactgtactcacttgtcagttaatagggagagggca 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcaccgctgggtgccgcttagaagactgtactcacttgtcagttaatagggagagggcg 308
Query: 121 aggaaggtcttgggggaaaggaagaattgcccctaagccttgatgtgaaaattgagttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aggaaggtcttgggggaaaggaagaattgcccctaagccttgatgtgaaaattgagttat 368
Query: 181 tctaatttgtggggatcaaggggtgggg------------cagacaaagagaggttccag 228
||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 369 tctcatttgtggggatcaaggggtgggggtgggggtggggcagacaaagagaggttccag 428
Query: 229 acctccagggggcgtttctgcatccatcctaccataaactccccgcccagtggggtccca 288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 429 acctccagggggcgtttctgcatccatcctaccataaacttcccgcccagtggggtccca 488
Query: 289 agaactaatttgttcctccaagaactggggcttaagtatgaaaaagtgaacta-tcctca 347
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct: 489 aaaactaatttgttcctccaagaacgggggcttaagtatgaaaaagtgaactactc-tca 547
Query: 348 acagctttattttctcatgctttgtttggcggtgtaatatttattcagctttgaccgggg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acagctttattttctcatgctttgtttggcggtgtaatatttattcagctttgaccgggg 607
Query: 408 cctgcctaatgacagatgcatgctgactttagccaccaactgagtttaggaggaagccaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cctgcctaatgacagatgcatgctgactttagccaccaactgagtttaggaggaagccaa 667
Query: 468 gactgaaggcttcctaactcccagtatgcaaggtccctgtattc 511
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gactgaaggcttcctaactcccagtatgcaaggtccctgtattc 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
