XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACGCTTTCGTTCAGCTGTCTCTAAGCTCTGCAGCAACTAGAGCTCTCT
CAGGAGGATGGGGACCACAGAGCTGTTCCTTGCTGCTTCTGGGTCATCCA
GAATCTTCTGACTGTAAGACATTGTCTGTGAAGGGCTGGTGAACCTTTAG
CTTCTAGGGCCTAACAGTCCCTATTGCTCTTAAGCTCTCCCTTCCCGTCT
ATAAATAATCCATAAAAGAATTATGTCATCCGTTAAGTCCCAGCTCCAAA
ACTTGTCTGATCTCTCTTATTTCACATGTTGCTGACCCCTGGGTTAGGTG
ACATCTTCGGTGTGCATGCTCTCCATTTCCACCAAGGAGCACAAGGAAGC
AGTGTCCTAAAGTTGAGCAAAATTCCAGCCTCCGTGCGTTCAATTGACAA
AATTAACAGTAGTTTGATCCAGGCATGGCGCCCAATCTGTAATCTCAGTA
CAGAGGTGCATTTAGATTCATACTCAAGGCCAACCTATCTGAACTCTGTT
AGACCCCCATCTCACAAAATCCATATAAACAGAGATCTAATGACTACTCC
CATTTAAAATGTCCCTCCCCACCCTCCCATATTTTGTAGATGGCTCCTTG
GTACACCGTGTTTTGTTTCTAAGCTGAATGCCCTGTATTCTTTCCCTCAT
AGTCCCCCTTGTTCGATGCATAATATCTTTTCGCAACCCTGTCTTTTGTT

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGACCACGAGGGCAGATAGAAATCTTGCC
TTGAAGGAAGTTAGTGGGGGATGGGAGAGGGGTACACTACCATTTTCTCC
TAAAACCTCCTTCTGATGAGCAAGCTCAGCTCTTGGATATGTTTAGCTTC
CACAGAAATGGGGGACTGTGTGTGTGTGTGTGGGGGGGGGAGTCCCTGTT
ATCCAGCTGCTATCCCACATTACCCCTTTATGCTGTGCTGCCTGAATAGC
TTCCACCCGATTTTTTTTATTTCGCAGCCCCCCCATACATGTTGTCAGTT
TCCTGTCTTGTTTCGCCCCATTCTGTAGCCCGGCTTAATTTGTTTCTTTG
TTCGGTCCCCTCCTCACCTCTGCTTACCCATTTACTTTCATCACCCTGTC
CCCTTTTTCCTTTCTTCATCTCCATTTTGCCCCTGTGTAATCACTTTATC
GGCTTCCCCCCTCCCTGTTTTTCTATCTTCTTTTGCCCCCTTCTTATTCC
TTTTCTCCTTCCCCTCTCCTTCTTTACTTTTCCCATATTTCACCTTTCCT
ACTTCTGTATTTCTCCGTTTTCTAAATACCCCCTTTAGCCTCTTCTCTCT
CTTTTGCCCCCTCTATTTTGCCCCCCTCCCTTCTTCTTTTTCTACTCCAT
CTCCCCCCGTCCTATATTCCTCCCTCCTTTAACCACCCTTCCACTTGGCC
CTTTTTGTCCCCATTTTCATTACTCTTTCTCTCTCATATACTCATTCCCG
CTCTTN

Query= MSMg01no372_m06.b1 MSMg01no372_m06.b1 CHROMAT_FILE:
MSMg01no372_m06.b1 PHD_FILE: MSMg01no372_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:35 2005
         (249 letters)



>mm_chr2_169817531_169818179
          Length = 649

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtctctaagctctgcagcaactagagctctctcaggaggatggggaccacagagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtctctaagctctgcagcaactagagctctctcaggaggatggggaccacagagctgt 260

                                                                       
Query: 61  tccttgctgcttctgggtcatccagaatcttctgactgtaagacattgtctgtgaagggc 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 261 tccttgctgcttctgggtcatccagaatcttccgactgtaagacattgtcggtgaagggc 320

                                                                       
Query: 121 tggtgaacctttagcttctagggcctaacagtccctattgctcttaagctctcccttccc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgaacctttagcgtctagggcctaacagtccctattgctcttaagctctcccttccc 380

                                                                       
Query: 181 gtctataaataatccataaaagaattatgtcatccgttaagtcccagctccaaaacttgt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctataaatagtccataaaagaattatgtcatccgttaagtcccagctccaaaacttgt 440

                 
Query: 241 ctgatc 246
           ||||||
Sbjct: 441 ctgatc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no372_m06.g1 MSMg01no372_m06.g1 CHROMAT_FILE:
MSMg01no372_m06.g1 PHD_FILE: MSMg01no372_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:35 2005
         (176 letters)



>mm_chr2_169952967_169953542
          Length = 576

 Score =  333 bits (172), Expect = 5e-96
 Identities = 175/176 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaccacgagggcagatagaaatcttgccttgaaggaagttagtgggggatgggagaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agaccacgagggcagatagaaatcttgccttgaaggaagttagtgggggatgggagaggg 317

                                                                       
Query: 61  gtacactaccattttctcctaaaacctccttctgatgagcaagctcagctcttggatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtacactaccattttctcctaaaacctccttctgatgagcaagctcagctcttggatatg 257

                                                                   
Query: 121 tttagcttccacagaaatgggggactgtgtgtgtgtgtgtgggggggggagtccct 176
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 256 tttagcttccacagaaatgggggactgtgtgtgtgtgtgtgtgggggggagtccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)