BAC Information

Click to search

BAC

Clone NameMSMg01-372M23
Chromosome2 (Build37)
Map Location 68,297,558 - 68,297,963
singlet/doubletsinglet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372M23.T7 (MSMg01no372_m23.b1)MSMg01-372M23.TJ (MSMg01no372_m23.g1)
ACCAG478987AG478988
length786792
length of high quality
(start - end)		437 (60 - 496)406 (68 - 473)
definitionCHROMAT_FILE: MSMg01no372_m23.b1 PHD_FILE: MSMg01no372_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:38 2005CHROMAT_FILE: MSMg01no372_m23.g1 PHD_FILE: MSMg01no372_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCAG
AGTTACTATGCTTATTGCTTTCAATACCACAGTATCTGAATATCTCAATA
TCTGGAAAACATGCATTTTAATCAGCAAAACTAACTTTATCTAAATAAAT
TTTTAAAAACTATTATTACAATTACATTGTTTTTCTCTTTCCTTGCTTTC
CTCCAAACCCCACCAGTGTACCCAACTTGCTTTCTTTCAAATACAAGGTC
ATTTTTCTTTAATTATTGTTCCATACATATACATGAATATATATACATGC
CTGTGTATGGGTGCATGTTTGTATTATTCCCATACACATAAATGCAGCCA
GCTTATTCTGTATAACGTCATCTTTATGTATGCTTCCAGGGCTGATCATT
TGGTATTGCATAACAAAGTGTGTACTTCCCTGGGCTAAGGAAGGCTGCTG
CTCCCACTCTCAGCCTTCCTTAGTCCCCATGGGCCATTGTGTAGCGCTGA
GAACTCATGCGCTTTCCCCAATCCACATCAGCATGACCTTGGTCAGCTCC
TGTTTCAGCAGACTTGTTTGTGAGAAATCCTGGGTGTAACTTCTGAAATT
CCCAAAAACACAGTGTCTCACCAAATGGCCTGAAACCATGGCTCTTAAAA
TGGTTCTAAAACCTCCTTCTACAATGAACCCTGAACCCTTAATTCCCAAA
CCAAAAAAAAGGTTTTTTTCCCTATTCTTTTAAACAAAAAAAACTTTAAA
AAATTTTAATTTCACCCCTTTAAAATTGCCTTCCCC

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGGACATCGTGCACTACACAGATAGTGGAAAG
GTGCCTTGGCTACATGAGACCCTGCTAGAAGAATAGGACATGAAGCTTTC
TGATAAAATCCCGCATCTTTGATGACAGCAGCAGGAAGATGCCCCTATTA
AAGCACCTCACCCTCTCTTGAAGCCTGGAGTGTCGCTTTTTAAACAAGCA
GTGGGTATGTGCTTTAGCGGAAGTAAAGGATCTAGCCCCATCCTGCTGTC
TGCCCCAAACACCCCTCTTCTTAGGCTCATGCTAATGACCACAGTTGGAA
GCCTCACAGAACACTTGACCCATTTCAGTCTCCACACTACACAGGAAATG
TTTCCATTAGAGTTCTTACTTAAGGCCAGGCACTAGGTTTGACTATCCAC
AAACTTGAAAGGGCATTGCTAAGAAAAAAGAAAGGAAGGGAACGTGAGGT
TAGGGTTATCCCACTCCAATCCGTTATCTTCTTTTTTTCCCTCTCCTATT
TTCCCCCTCCTTTTCCTTTCTCTATCCCCATTTTTTTACTTAGCATTCCC
CTCATTTTCCCCTTCTCGTTCTCCCTCCGCCCATCTTCCTCTTTTTTTTC
AAATCCTTTCTCCATTTTTCTTTATTTTCCCCCCTCTTCGCCCCCCTACT
TTGTTTCCCTCCCTTTTTTCCCCCCTTTTCTCCCCCCCCACCATTTTCGC
CCCCACCCCTCCCTTAATATTTTCTTTTACCTCCCTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_m23.g1 MSMg01no372_m23.g1 CHROMAT_FILE:
MSMg01no372_m23.g1 PHD_FILE: MSMg01no372_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:38 2005
         (406 letters)



>mm_chr2_68297358_68298163
          Length = 806

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacatcgtgcactacacagatagtggaaaggtgccttggctacatgagaccctgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggacatcgtgcactacacagatagtggaaaggtgccttggctacatgagaccctgcta 260

                                                                       
Query: 61  gaagaataggacatgaagctttctgataaaatcccgcatctttgatgacagcagcaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaataggacatgaagctttctgataaaatcccgcatctttgatgacagcagcaggaa 320

                                                                       
Query: 121 gatgcccctattaaagcacctcaccctctcttgaagcctggagtgtcgctttttaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgcccctattaaagcacctcaccctctcttgaagcctggagtgtcgctttttaaacaa 380

                                                                       
Query: 181 gcagtgggtatgtgctttagcggaagtaaaggatctagccccatcctgctgtctgcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgggtatgtgctttagcggaagtaaaggatctagccccatcctgctgtctgcccca 440

                                                                       
Query: 241 aacacccctcttcttaggctcatgctaatgaccacagttggaagcctcacagaacacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacacccctcttcttaggctcatgctaatgaccacagttggaagcctcacagaacacttg 500

                                                                       
Query: 301 acccatttcagtctccacactacacaggaaatgtttccattagagttcttacttaaggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccatttcagtctccacactacacaggaaatgtttccattagagttcttacttaaggcc 560

                                                         
Query: 361 aggcactaggtttgactatccacaaacttgaaagggcattgctaag 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcactaggtttgactatccacaaacttgaaagggcattgctaag 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |