BAC Information

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BAC

Clone NameMSMg01-373F11
Chromosome2 (Build37)
Map Location 155,598,561 - 155,757,550
singlet/doubletdoublet
Overlap geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Upstream geneRaly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr
Downstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373F11.T7 (MSMg01no373_f11.b1)MSMg01-373F11.TJ (MSMg01no373_f11.g1)
ACCAG479394AG479395
length710764
length of high quality
(start - end)		484 (10 - 493)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no373_f11.b1 PHD_FILE: MSMg01no373_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:17 2005CHROMAT_FILE: MSMg01no373_f11.g1 PHD_FILE: MSMg01no373_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,598,561 - 155,599,037)(155,757,307 - 155,757,550)
sequence
NTTTCGAGAGGATCCGCGGAATTCATGACATGTCTTGAGTTGCTCTTTTT
TTTTTCCTAATTTAAGACTTACACTATTTTAAATCAATTGTCTCTCCCTG
TGTGTATGTGTACAAGAGTGCAGGAACCCACAGAAGGCAGAGGAATTGGA
TCCGTTGGAGCTGAGATTATAGGTAATTGTGAGCCACCCATTATAAATGC
TGGAAACAAAACATGGGTCCCCTGTAGGAACAGCACAAGAGCACAGGTAC
CATTTGGCCGCTGGGCCACTGCTCCAGTCTGAGTCCATTTACTCTTATTG
TCTCTTCTTGTCATTTTCCCACTGCCACCTCCACCCTCCACCCCTCCATC
ATGGGAGAACACTTAGTTCTGGATCATCGGTAGCAGTTCCTGGATGTTTG
GTCTTAAACACAGGAGAAGGCTCAGTCGGCTCCATTCCTTGTCTCTCGGA
ATGCAACCCCCCCCACACACACACACACACAACCTTCCCCAAACAGACAA
TTCATTATCTTTCTTCAGCGTTTCTGCAATGCTCTGGGTTCATCTTGGCC
ATTACTTACATAAACTTGTTTTATCTCCCTCTCCTCCCCGATTGAAAATT
GGTCAATGCTATCTGCCCATGTGTATTGTGATGTTGGGGGTTTGGTNTNN
AAATCNNNTTTACTTCCTTTTATTCCTTTCTTCTCTTTTTACACTTCTTT
TGTCTACTCG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTCAGGCAGTCAGTGCTCCTAAC
CACTGAGCCATCTTTCTAGCCCAGAGCATGTTTTTTTTTTTTTTTTTTTT
TCTTTTCTTTTTTTTAGGCAGAACCCATTTCCTGGCATTTCCTCAGCAGC
TGCAGGGGTCCCTCACATAAGCAAGCAGTTTAACAGAAGCTGGGGTAAGC
AGTTAGCTGGAGGGGGAGGTTGGCACAAGCAGGAGCCAAGACAGGTTAAC
TAGGGCATCCTGACCTTTTTTTCTTAGAACAGAGTTGGGTAATTTCCCAC
AGGAGTCTCTATCACGGAGATCAAATTCTAATTAAACCTGAAATGGCCTC
AGCTCGAATACAAGACCCAGGAATTGCTCCATTGTCTTACTCTGCACCAA
GGTTAATTTAATCATTTCACACGCACACATTTAACAACCAGAATCCCGAT
AAATATACAGAATTTCGTCAGGTGTCGTTTCCCGCTTGTCATATAGAGTT
TACCCTTTCCTTACTCACCCAAATTTTGGGATGTTGGTTATTCGTTTTTT
ATGTTATTCACTGTTATGTACTGCCTTTACCTATGTTAAGTCTTCCGTTA
ATTTTACACCCCTGATTTTTATTTTTTATCTTAATCATCATCATCCTCGC
ACTTGAACAGGCCTATTATCTCCGCGTTGACCTCAAATGGCGCGGGGTGT
GGGGTGTGGTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_f11.b1 MSMg01no373_f11.b1 CHROMAT_FILE:
MSMg01no373_f11.b1 PHD_FILE: MSMg01no373_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:17 2005
         (484 letters)



>mm_chr2_155598353_155599237
          Length = 885

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   ggaattcatgacatgtcttgagttgctcttttttttttcctaatttaagacttacactat 68
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggaattcatgacatgtattgagttgctcttttttttttcctaatttaagacttacactat 268

                                                                       
Query: 69  tttaaatcaattgtctctccctgtgtgtatgtgtacaagagtgcaggaacccacagaagg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttaaatcaattgtctctccctgtgtgtatgtgtacaagagtgcaggaacccacagaagg 328

                                                                       
Query: 129 cagaggaattggatccgttggagctgagattataggtaattgtgagccacccattataaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagaggaattggatccgttggagctgagattataggtaattgtgagccacccattataaa 388

                                                                       
Query: 189 tgctggaaacaaaacatgggtcccctgtaggaacagcacaagagcacaggtaccatttgg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgctggaaacaaaacatgggtcccctgtaggaacagcacaagagcacaggtaccatttgg 448

                                                                       
Query: 249 ccgctgggccactgctccagtctgagtccatttactcttattgtctcttcttgtcatttt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccgctgggccactgctccagtctgagtccatttactcttattgtctcttcttgtcatttt 508

                                                                       
Query: 309 cccactgccacctccaccctccacccctccatcatgggagaacacttagttctggatcat 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cccactgccacctccaccctccacccctccatcatgggagaacacttagttctggatcat 568

                                                                       
Query: 369 cggtagcagttcctggatgtttggtcttaaacacaggagaaggctcagtcggctccattc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cggtagcagttcctggatgtttggtcttaaacacaggagaaggctcagtcggctccattc 628

                                                                    
Query: 429 cttgtctctcggaatgcaaccccccccac-acacacacacacacaaccttccccaaa 484
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 629 cttgtctctcggaatgcaacccccccccccacacacacacacacaaccttccccaaa 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space:   414750
Effective search space used:   414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_f11.g1 MSMg01no373_f11.g1 CHROMAT_FILE:
MSMg01no373_f11.g1 PHD_FILE: MSMg01no373_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:17 2005
         (244 letters)



>mm_chr2_155757017_155757660
          Length = 644

 Score =  460 bits (238), Expect = e-134
 Identities = 242/244 (99%), Gaps = 2/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcaggcagtcagtgctcctaaccactgagccatctttctagcccagagcatg--ttt 58
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 534 aactcaggcagtcagtgctcctaaccactgagccatctttctagcccagagcatgttttt 475

                                                                       
Query: 59  ttttttttttttttttttcttttcttttttttaggcagaacccatttcctggcatttcct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttttttttttttttttttcttttcttttttttaggcagaacccatttcctggcatttcct 415

                                                                       
Query: 119 cagcagctgcaggggtccctcacataagcaagcagtttaacagaagctggggtaagcagt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cagcagctgcaggggtccctcacataagcaagcagtttaacagaagctggggtaagcagt 355

                                                                       
Query: 179 tagctggagggggaggttggcacaagcaggagccaagacaggttaactagggcatcctga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tagctggagggggaggttggcacaagcaggagccaagacaggttaactagggcatcctga 295

               
Query: 239 cctt 242
           ||||
Sbjct: 294 cctt 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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