BAC Information

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BAC

Clone NameMSMg01-374B10
Chromosome2 (Build37)
Map Location 33,325,219 - 33,480,184
singlet/doubletdoublet
Overlap geneLOC676764, Lmx1b
Upstream geneC230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43
Downstream geneLOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374B10.T7 (MSMg01no374_b10.b1)MSMg01-374B10.TJ (MSMg01no374_b10.g1)
ACCAG479966AG479967
length787817
length of high quality
(start - end)		533 (46 - 578)404 (76 - 479)
definitionCHROMAT_FILE: MSMg01no374_b10.b1 PHD_FILE: MSMg01no374_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:12 2005CHROMAT_FILE: MSMg01no374_b10.g1 PHD_FILE: MSMg01no374_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,479,742 - 33,480,184)(33,325,219 - 33,325,622)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTAGCTGTGTGACCCTCAGCAGGTTTCTCAGACTTTTTGCCT
CTCTTGTTGTTTCACCAAAAATATTAGGAATCAAAAAATCTACCCAGCCC
TCAGGGTGGCCCGGAGATGTGAAATGTATTGATGTGTATGAAGAGTGACA
TTAGTCATTGTGAGTGACTTTTGTCATAGGCAGGACCTCTATCTAGCACT
GTGATAGGACATTAAGAATCTGTGTGGCTGGAGGCTTAGGGCTGTGTGAG
ATGGCTCAGCAGGTAAAGGTGTTGCCAGCCCTGATCACATGTGTTGCATC
TTTAGAACCCACAGTGGGAGGAGAAAACCAACTAAGTTGGGCTAATGTAA
GCTGTGTTCTGACCTCCACACACATGCATGCTCCCTGCCCCCATAATAAT
AAAACATTTTTAAAAGAATCTATGCAAGAGACAGGGGCTGTAGCTTCACC
AGAACAGCCTGGCATGTGAGAGGTCCTGGGTTTGATCCCAGCTCTGAATA
AACGGGCTGCAGTGAGACATGCCTGAGATTGCCTGGGAAGAGCATAAGGG
TAAGAAGTATACCAGGTCTAGTACACAGGGGCTCCGTGTGTCATAATCTG
TGAGAAGGTTTCCTGGGAGACTGAAACTGGGCAAATTGAGGACAGTGTTG
CATGTGATATTCTAAAAAAAACATTTTGGAGTTAAATCTGGGACCTGTTA
AGAATGCCTCGGTAAAAAACTCGTTTTTAAAAAATCG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCCCAGAACCATATAAAAATAGC
AGGTGTGGTGGCAGGATTTTAACGCCAGTGCTGTGGAGGCAGGGATCAGT
GAGTTTCAGAATAACAGAGAACCTGCCTAAAAGGAGTGGCTGGCACTAGG
GGTTTTCCTTTGACCAGCACAACCACATCTGCATGAACACACATACAAAT
ACACATGCATATAAAAAAGAAAAAATTGGGGCTGGGGTTGGGGTCGGAGA
GATGCCTCAGAGGTTAAGAGCACTGGCTGTTCTTCCAGAGGTCCTGAGTT
CATTTCCCAGAACCCACATGGTGGCTCACAACCATCCATACTGGGATATG
ATGTCTTCTTCTGCATGCAGGCGTACAAGCCGATAGAGCACTCCTATACG
TAAAATAAATAAATCTTTAAAAAAATGGAGATGGGTTGGAGGCTAAGCCG
ACTTGGTTGACATATGCCATTCTGGTTCAACCTGAACTTGTGTATGATGG
CTTGTCTCAAAGAACCCAAATAGAAAATCCCCACACATCCGAAGGTATAG
CCCTGTATAATCTAGGCCTTCTGCTTTGCTATCTTTTTGAACGCTTACAT
GTTCTTTTTCAGTTTTCTTGTTCTTTGTCCGTCCTCTACCTCCTTTTTGA
AACAAACCGTATGTTTCTTTTTTTCTCACTTTACATCCCCTCCTCTACCA
CCCCTTCATATTGCTTTTCCTTTCCTTTCTCTCTTCTTTATGTTACCATC
TCCTTGGCCCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_b10.b1 MSMg01no374_b10.b1 CHROMAT_FILE:
MSMg01no374_b10.b1 PHD_FILE: MSMg01no374_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:12 2005
         (533 letters)



>mm_chr2_33479742_33480674
          Length = 933

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtagctgtgtgaccctcagcaggtttctcagactttttgcctctcttgttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattctctgtagctgtgtgaccctcagcaggtttctcagactttttgcctctcttgttg 384

                                                                       
Query: 65  tttcaccaaaaatattaggaatcaaaaaatctacccagccctcagggtggcccggagatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttcaccaaaaatattaggaatcaaaaaatctacccagccctcagggtggcccggagatg 324

                                                                       
Query: 125 tgaaatgtattgatgtgtatgaagagtgacattagtcattgtgagtgacttttgtcatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaaatgtattgatgtgtatgaagagtgacattagtcattgtgagtgacttttgtcatag 264

                                                                       
Query: 185 gcaggacctctatctagcactgtgataggacattaagaatctgtgtggctggaggcttag 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 gcaggacctctatctagcactgtgataggacatcaagaatctgtgtggctggaggcttag 204

                                                                       
Query: 245 ggctgtgtgagatggctcagcaggtaaaggtgttgccagccctgatcacatgtgttgcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggctgtgtgagatggctcagcaggtaaaggtgttgccagccctgatcacatgtgttgcat 144

                                                                       
Query: 305 ctttagaacccacagtgggaggagaaaaccaactaagttgggctaatgtaagctgtgttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ctttagaacccacagtgggaggagaaaaccaactaagttgggctaatgtaagctgtgttc 84

                                                                       
Query: 365 tgacctccacacacatgcatgctccctgcccccataataataaaacatttttaaaagaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tgacctccacacacatgcatgctccctgcccccataataataaaacatttttaaaagaat 24

                                  
Query: 425 ctatgcaagagacaggggctgta 447
           |||||||||||||||||||||||
Sbjct: 23  ctatgcaagagacaggggctgta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_b10.g1 MSMg01no374_b10.g1 CHROMAT_FILE:
MSMg01no374_b10.g1 PHD_FILE: MSMg01no374_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:12 2005
         (404 letters)



>mm_chr2_33325019_33325822
          Length = 804

 Score =  781 bits (404), Expect = 0.0
 Identities = 404/404 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcccagaaccatataaaaatagcaggtgtggtggcaggattttaacgccagtgctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcccagaaccatataaaaatagcaggtgtggtggcaggattttaacgccagtgctgtg 260

                                                                       
Query: 61  gaggcagggatcagtgagtttcagaataacagagaacctgcctaaaaggagtggctggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggcagggatcagtgagtttcagaataacagagaacctgcctaaaaggagtggctggca 320

                                                                       
Query: 121 ctaggggttttcctttgaccagcacaaccacatctgcatgaacacacatacaaatacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggggttttcctttgaccagcacaaccacatctgcatgaacacacatacaaatacaca 380

                                                                       
Query: 181 tgcatataaaaaagaaaaaattggggctggggttggggtcggagagatgcctcagaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatataaaaaagaaaaaattggggctggggttggggtcggagagatgcctcagaggtt 440

                                                                       
Query: 241 aagagcactggctgttcttccagaggtcctgagttcatttcccagaacccacatggtggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagcactggctgttcttccagaggtcctgagttcatttcccagaacccacatggtggc 500

                                                                       
Query: 301 tcacaaccatccatactgggatatgatgtcttcttctgcatgcaggcgtacaagccgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacaaccatccatactgggatatgatgtcttcttctgcatgcaggcgtacaagccgata 560

                                                       
Query: 361 gagcactcctatacgtaaaataaataaatctttaaaaaaatgga 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcactcctatacgtaaaataaataaatctttaaaaaaatgga 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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