Query= MSMg01no374_f16.b1 MSMg01no374_f16.b1 CHROMAT_FILE:
MSMg01no374_f16.b1 PHD_FILE: MSMg01no374_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:34 2005
(525 letters)
>mm_chr2_102457939_102458862
Length = 924
Score = 901 bits (466), Expect = 0.0
Identities = 508/522 (97%), Gaps = 3/522 (0%)
Strand = Plus / Plus
Query: 5 gaattctaac-tctctcagttggggagacatcacaaaaatgcagccatggcagtttacct 63
|||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 205 gaattctaacat-actcagttggggagacataa-aaaaatgcagccatggcagtttacct 262
Query: 64 tgttatttctgaacagagcttagacactggttgtttatggcagtctgtgcatgcggagat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgttatttctgaacagagcttagacactggttgtttatggcagtctgtgcatgcggagat 322
Query: 124 caggatccacgggggtggcacttgtgttttccctctgaggatatcaatgggctggaacca 183
|||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 323 caggatcctcgggggtggcacttgtgttttccctctgaggatgtcaatgggttggaacca 382
Query: 184 cctccccagagggagttctttcaaaattaacgaaaaatgcaagcaaacatttggagaatc 243
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 cctccccagagggaattctttcaaaattaacgagaaatgcaagcaaacatttggagaatc 442
Query: 244 tccaaacaccaaaatacccaaattggaccagaaacttgttttttaaaagcagcttcaagg 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccaaactccaaaatacccaaattggaccagaaacttgttttttaaaagcagcttcaagg 502
Query: 304 atcaccaaagccagcatgcatgagagtcctgtcctttgtggatgtgcctttaaacctagt 363
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atccccaaagccagcatgcatgagagtcctgtcctttgtggatgtgcctttaaacctagt 562
Query: 364 ccccagcaaatacagagccaagaggcagaatcacatgtttctctcatagttggtgttatc 423
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 563 cgccagcaaatacagagccaagaggcagaatcacgtgtttctctcatagttggtgttatc 622
Query: 424 tcagatgcaggtcttaccatgtagtgtgaagagagtccaagtgattgaaaacctctggta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcagatgcaggtcttaccatgtagtgtgaagagagtccaagtgattgaaaacctctggta 682
Query: 484 aacaccgagtcctttcccctaaatgaggtttgtctatgctgc 525
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aacaccgagtcctttcccctaaatgaggtttgtctatgctgc 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_f16.g1 MSMg01no374_f16.g1 CHROMAT_FILE:
MSMg01no374_f16.g1 PHD_FILE: MSMg01no374_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:34 2005
(520 letters)
>mm_chr2_102628115_102629032
Length = 918
Score = 959 bits (496), Expect = 0.0
Identities = 513/520 (98%), Gaps = 2/520 (0%)
Strand = Plus / Minus
Query: 1 ttttcttcctaaccatcctcagtctttgctactctatgtttcattagggccaattttcac 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 718 ttttcttcctaaccatcctcagtctttgctactc--tgtttcattagggccaattttcac 661
Query: 61 ataaacatctagaaatgcatgggagattctgatagagaagtggtcccgctattagcacca 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 660 ataaacatctagaaatgcatgggagattctgatagagaagcggtcccgctattagcaccg 601
Query: 121 gcctttattcttcttatagaaaaataaaattagaaaggtccattgggcaaacaagaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gcctttattcttcttatagaaaaataaaattagaaaggtccattgggcaaacaagaactg 541
Query: 181 gtgtcgggaaacagcagtcagcaccattccttgatgctgaaggattaactgttcagttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtgtcgggaaacagcagtcagcaccattccttgatgctgaaggattaactgttcagttgt 481
Query: 241 atatgctaattacctaaggggcttaagcaattcttcgttctgagtttggtcaagttattc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atatgctaactacctaaggggcttaagcaattcttcgttctgagtttggtcaagttattc 421
Query: 301 attgcatcattaaggactgagttccaaaatttctcaaatgtgtctgtatgctcaggaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attgcatcattaaggactgagttccaaaatttctcaaatgtgtctgtatgctcaggaaac 361
Query: 361 agttgataccccaaattgctatagaaatgtgtgctctaattagctatacttctatctatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agttgataccccaaattgctatagaaatgtgtgctctaattagctatacttctatctatg 301
Query: 421 tggntttatagaanatatcataagaaaatatctgtctgaaaaaattacagataccaaaga 480
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tggttttatagaaaatatcataagaaaatatctgtctgaaaaaattacagataccaaaga 241
Query: 481 gactatatcagcctactctgagtctttatgatttttgaag 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gactatatcagcctactctgagtctttatgatttttgaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 918
Length adjustment: 10
Effective length of query: 510
Effective length of database: 908
Effective search space: 463080
Effective search space used: 463080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
