Query= MSMg01no374_g20.b1 MSMg01no374_g20.b1 CHROMAT_FILE:
MSMg01no374_g20.b1 PHD_FILE: MSMg01no374_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:39 2005
(464 letters)
>mm_chr2_132761502_132762364
Length = 863
Score = 766 bits (396), Expect = 0.0
Identities = 435/461 (94%), Gaps = 21/461 (4%)
Strand = Plus / Minus
Query: 4 ggaattctttttcttttcagttgtcttgtttttttttgttttcatcagttgttactttgt 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 465 ggaattctttttcttttcagttgtcttg-ttttttttgttttcatcagttgttactttgt 407
Query: 64 ttattttagatatcagaagaccagaagaactttcattgttaaagccttctagtgactact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttattttagatatcagaagaccagaagaactttcattgttaaagccttctagtgactact 347
Query: 124 gtaaaaagaaaaaaaagaaagaaaaaaatagtaaagagccagtgattgaagacatcctga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtaaaaagaaaaaaaagaaagaaaaaaatagtaaagagccagtgattgaagacatcctga 287
Query: 184 acctggaaagttcttcaacaagttcatgttccccgggtaaggggctgctgcttctacttc 243
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 286 acctggaaagttcttcaacaagttcaggttccccaggtaaggggctgctgcttctacttc 227
Query: 244 tgactgtagaccccaatggaaaatctctctctctctctctctctctctctctctctctct 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgactgtagaccccaatggaaaacctctctctctctctctctctctctctctctctctct 167
Query: 304 ctctctctctctctctctctctctctcacacacacacacacacacacacacacacacaca 363
||||||||||||||||||||||| |||||||||||||||||
Sbjct: 166 ctctctctctctctctctctctc--------------------acacacacacacacaca 127
Query: 364 cacacaggaccctaaaancaacacaggggatctctatgtctccccctcttcctttctctt 423
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cacacaggaccctagaagcaacacaggggatctctatgtctccccctcttcctttctctt 67
Query: 424 acccctccctctctccacgttctctccaagcaaagaaggat 464
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acccctccctctctccacgttctctccaagcaaagaaggat 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 121
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_g20.g1 MSMg01no374_g20.g1 CHROMAT_FILE:
MSMg01no374_g20.g1 PHD_FILE: MSMg01no374_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:40 2005
(397 letters)
>mm_chr2_132591412_132592206
Length = 795
Score = 561 bits (290), Expect = e-164
Identities = 390/452 (86%), Gaps = 59/452 (13%)
Strand = Plus / Plus
Query: 1 tttattttcagttttgtttttctcttcttttctcctcc-----------tcctcctcct- 48
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 148 tttattttcagttttgtttttctcttcttttctcctcctcctctcctcttcctcctcctc 207
Query: 49 ctc--ctt-ttcctc---------ctc-ctcctc--ttcttcctttctctctctctctc- 92
||| ||| |||||| ||| |||||| |||||||||||||||||||||||
Sbjct: 208 ctcctcttcttcctctctctctctctctctcctcctttcttcctttctctctctctctct 267
Query: 93 -tctttc--tcttt---------------ttctttc--tc---ccttccttccttcctt- 128
|||||| ||||| ||| ||| || ||||||||||||||||
Sbjct: 268 ttctttctttcttttccttccttccttccttccttccttccttccttccttccttccttc 327
Query: 129 -tt--tttctagggtctttctacatagtcctgaatgtcctggaagtcactacattggcca 185
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 328 cttcctttctagggtctttctacatagtcctgaatgtcctggaagtgactacattggcca 387
Query: 186 tactagtctcaaactcagagatctgtctcttgggaaagtgctagtattaaaggagtgcac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tactagtctcaaactcagagatctgtctcttgggaaagtgctagtattaaaggagtgc-- 445
Query: 246 ccccatgcccagctcagacaatctttcattcattgctataggtttttaatttttaaaaat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccccatgcccagctcagacaatctttcattcattgctataggtttttaatttttaaaaat 505
Query: 306 tctaaatgagaaatattctgtttggtggtatttgtgaagaacctatagagagcatccaga 365
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 tctaa--gagaaatattctgtttggtggtatttgtgaagaacctatagagaacatccaga 563
Query: 366 cattgcaaatgccaccaaaagctactgaggaa 397
||||||||||||||||||||||||||||||||
Sbjct: 564 cattgcaaatgccaccaaaagctactgaggaa 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 795
Length adjustment: 9
Effective length of query: 388
Effective length of database: 786
Effective search space: 304968
Effective search space used: 304968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
