Query= MSMg01no374_k09.b1 MSMg01no374_k09.b1 CHROMAT_FILE:
MSMg01no374_k09.b1 PHD_FILE: MSMg01no374_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:57 2005
(555 letters)
>mm_chr2_13601833_13602787
Length = 955
Score = 911 bits (471), Expect = 0.0
Identities = 530/555 (95%), Gaps = 14/555 (2%)
Strand = Plus / Minus
Query: 4 gaattcattaaagt--ttttcttattaccttttcaaaaatgtattgtgtttatgaataca 61
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaattcattaaagtccttt--ttattaccttttcaaaaatgtattgtgtttatgaataca 648
Query: 62 ctattctctatgaatctgggggcagaatcaatttgctctttgcttacactgacatatatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 647 ctattctctatgaatctgggggcagaatcaatttgctctttgcttacactgacatctatt 588
Query: 122 gattttgttcgctgtggttctgtgaccctatggaggaaataaatgattgctcatttgggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gattttgttcgctgtggttctgtgaccctatggaggaaataaatgattgctcatttgggt 528
Query: 182 atcctttccagctaacatgagtaacaaactattcattacttccatttctctgctctgggg 241
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 527 atactttccagctaacatgagtaacaaactattcattacctccatttctctgctctgggg 468
Query: 242 ctttcccagtttttcttttcatccaaattgtgctgtgacggttgccagattgagacagag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctttcccagtttttcttttcatccaaattgtgctgtgacggttgccagattgagacagag 408
Query: 302 atgga-cttgacatgttcactggccagagcagcccatgcacgggagatgctcttaataaa 360
|| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 407 at-gagcttgacatgttcactggccagagcagcccatgcacgggagatgctcttgataaa 349
Query: 361 tatctgtgaaatatgagtggatttcacctgtctttggagagagtctaaaagaacaccttt 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 348 tatctgtgaaatatgagtggattccacctgtctttggagagagtctaaaagaacactttt 289
Query: 421 cacttagcatttgacttgtccactaacagcctttatctttgttttctgaactcagtaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cacttagcatttgacttgtccactaacagcctttatctttgttttctgaactcagtaaat 229
Query: 481 gtatctcgaatctgtcccttctcccttctctgtcccttctccctaaaccacttgcttggt 540
|||||| |||||||||||||||||| || ||| || ||| ||||||| ||||||
Sbjct: 228 gtatcttgaatctgtcccttctccc--ctttgtacc------ctataccactttcttggt 177
Query: 541 gtcagcttactctgt 555
|||||||||||||||
Sbjct: 176 gtcagcttactctgt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_k09.g1 MSMg01no374_k09.g1 CHROMAT_FILE:
MSMg01no374_k09.g1 PHD_FILE: MSMg01no374_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:57 2005
(453 letters)
>mm_chr2_13398974_13399826
Length = 853
Score = 814 bits (421), Expect = 0.0
Identities = 445/453 (98%)
Strand = Plus / Plus
Query: 1 agctatgtgtgacttttgcccctgagatgcaagaggggaggactttcttctccttagctt 60
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 201 agctacgtgtgacttttgcccctgagatgcaagaggagaggactttcttctccttacctt 260
Query: 61 tgctagctctaaaccaacaccgtgcaagcacacgttaaactacaagtctctaaatgcagc 120
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgctagttctaaaccaacaccatgcaagcacccgttaaactacaagtctctaaatgcagc 320
Query: 121 tctaggtgcacatgtgccttggttgacagagtcacggcgtactctgcagctcacctcaga 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tctaggtgcacatgtgccttggttgacagagtcatggcgtactctgcagctcacctcaga 380
Query: 181 tccagggccaggcagatgtggatttagatctggcctcgaataagctttgtgtacatggag 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tccagggccaggcagatgtggatttatatctggcctcgaataagctttgtgtacatggag 440
Query: 241 aagttatttagtctttctaagcctcaacttctcctatttacaatgaaaataactctcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagttatttagtctttctaagcctcaacttctcctatttacaatgaaaataactctcttc 500
Query: 301 ccacgtctaattatggcctaaagttggatgctggcacactgcctagcaaatctccaactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacgtctaattatggcctaaagttggatgctggcacactgcctagcaaatctccaactc 560
Query: 361 tggagacctgttctagcattaagatgctcttgagtaggacatgcaggtaggtttaggcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggagacctgttctagcattaagatgctcttgagtaggacatgcaggtaggtttaggcac 620
Query: 421 ctctggaaaaatgatcagtggtagagggaagtt 453
|||||||||||||||||||||||||||||||||
Sbjct: 621 ctctggaaaaatgatcagtggtagagggaagtt 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
