BAC Information

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BAC

Clone NameMSMg01-375D01
Chromosome2 (Build37)
Map Location 145,220,570 - 145,221,097
singlet/doubletsinglet
Overlap geneSlc24a3
Upstream geneCsrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D01.T7 (MSMg01no375_d01.b1)MSMg01-375D01.TJ (MSMg01no375_d01.g1)
ACCAG480805AG480806
length758777
length of high quality
(start - end)
536 (46 - 581)303 (80 - 382)
definitionCHROMAT_FILE: MSMg01no375_d01.b1 PHD_FILE: MSMg01no375_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:42 2005CHROMAT_FILE: MSMg01no375_d01.g1 PHD_FILE: MSMg01no375_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAATTAATCCTCGTGTCGCTATACGACTCACTATATTCAGAGGATCC
GCGGAATTCAAGGAGTATGTTTGCCACAAGAAAAATAATCAACATTTACT
ACTGTACATCAAGTATTATACAATCAAAAAATGTTTGTGAAAGTATGGTA
ATCTCATAGGGCTTGTTTATGAATATGTAGTCTTGCCTTCACAAAATAGT
CACCTGGCTCTTAGGACTTCTTGATGAAAGTCAGTAAAACCTTTGTTTGC
AATAGACAAAGTGCCTTCAGGTGGTCCAAAAGCTTCTGCATGAGATTTGA
TGTTCAACTAGTTAGACACTATGAGCCCTTTTCCTTCTGAAAGGAAAGTG
ACCTATAACATTTAATAACGGGGCCATTTCCTGGTGTTCCATCTTTATCT
TGGCTCCTCCTCTGGGGCATTGAGGTGATTCTTAGATTTTCCTCATCCTA
AACCCAGTGCGTCCGTACTAATCAATTTTCCTTGCAACACATTTCTGGGA
GAATGTTCTATGGATATGCAACAGCCACTGACTTGTCTTAGCGCAGTCCT
CCAAGTGACTGTAACACATCAGTGAGAGGTTGTCACCGGATAGACAGGAT
CTGAGGTGTGGCCCATCAGACACATCCACTAATGGGCTTAGTCAACGTGC
ATGCCTTGTATTTGGATTCCTACAACACTGGACCGTGATGCTTAAAAATT
ATTTAAATGTTTATTATTAAAAAAACCATCTTCCATCACGGAATGCTTTG
CATTAAAA
TTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGCAGCAAGTCATTTGAG
ATGTGTACTTGCTGTTCAGCTAAATTCTATCTCCTCAAAACCCAGAAGAG
TGTGGTCTTACGTAACAGGTTAACCGTATTTGGAGACAGAGTCTTGAAAT
ATGGAATGGAATGAGATGTGGTCATTAGGACAGACCCCAACTGACTGGCA
TCTTTGGAAACAACTAAGCTTAGTATGCAAAGATGTCCAAAAGGAGACTT
GGTGAAGATGCTTAGATGTGGTGGCTATTGTTCTATCTAGGAGAAAGATC
TCATAGGAAACAACGCCCCACCCCCAACGCCATGACTCAGCTTTCGGTCA
GGGGAAAAGAAGACCCATACTCCGAACTAAACCAAACTAAGTCTTTTTGC
TGGGTCAGCCTCATACCTGTAGTCCTGTTTTGCTGGCCCTGACTTGCCAG
TGTAGTGAATATATGCTACAATCTCTGCTTTACTGATGGATCTCCCGCAT
GACTTTTTTTTTTGACCTGTTATTTGTTATGCCCTCTCGCATTATTTTGT
ATGCCTTGACATATCCATTGGCTTCTTACTCGCGTTTTTTCCCCTGTTAT
CTTTTCGTTTATTTCTTCCCCTATCTCCCTTATTTATTATCTTCTGTAGC
CCCCTTTATATCTTATTTTTTATCCATTCCTTCCTTTCCGCTTTATCTTT
TTCCCTTATTATCTCCCCCCTCTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d01.b1 MSMg01no375_d01.b1 CHROMAT_FILE:
MSMg01no375_d01.b1 PHD_FILE: MSMg01no375_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:42 2005
         (536 letters)



>mm_chr2_145220362_145221299
          Length = 938

 Score =  963 bits (498), Expect = 0.0
 Identities = 520/528 (98%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcaaggagtatgtttgccacaagaaaaataatcaacatttactactgtacatcaag 68
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 209 gaattcaaggagtaagtttgccacaagaaaaataatcaacatttactactgtacgtcaag 268

                                                                       
Query: 69  tattatacaatcaaaaaa--tgtttgtgaaagtatggtaatctcatagggcttgtttatg 126
           | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttttatacaatcaaaaaaaatgtttgtgaaagtatggtaatctcatagggcttgtttatg 328

                                                                       
Query: 127 aatatgtagtcttgccttcacaaaatagtcacctggctcttaggacttcttgatgaaagt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatatgtagtcttgccttcacaaaatagtcacctggctcttaggacttcttgatgaaagt 388

                                                                       
Query: 187 cagtaaaacctttgtttgcaatagacaaagtgccttcaggtggtccaaaagcttctgcat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagtaaaacctttgtttgcaatagacaaagtgccttcaggtggtccaaaagcttctgcat 448

                                                                       
Query: 247 gagatttgatgttcaactagttagacactatgagcccttttccttctgaaaggaaagtga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gagatttgatgttcaactagttagacactatgagcccttttccttctgaaaggaaagtga 508

                                                                       
Query: 307 cctataacatttaataacggggccatttcctggtgttccatctttatcttggctcctcct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cctataacatttaataacggggccatttcctggtgttccatctttatcttggctcctcct 568

                                                                       
Query: 367 ctggggcattgaggtgattcttagattttcctcatcctaaacccagtgcgtccgtactaa 426
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 569 ctggggcattgaggtgattcttagattttcctcatcctaaacccaatgcgtccgtactaa 628

                                                                       
Query: 427 tcaattttccttgcaacacatttctgggagaatgttctatggatatgcaacagccactga 486
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 629 tcaattttccttgcaacacatttctgggaggatgttctatggatgtgcaacagccactga 688

                                                           
Query: 487 cttgtcttagcgcagtcctccaagtgactgtaacacatcagtgagagg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cttgtcttagcgcagtcctccaagtgactgtaacacatcagtgagagg 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 938
Length adjustment: 10
Effective length of query: 526
Effective length of database: 928
Effective search space:   488128
Effective search space used:   488128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)