BAC Information

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BAC

Clone NameMSMg01-375E17
Chromosome2 (Build37)
Map Location 86,669,714 - 86,670,153
singlet/doubletsinglet
Overlap geneOlfr1094
Upstream geneOlfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141
Downstream geneOlfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375E17.T7 (MSMg01no375_e17.b1)MSMg01-375E17.TJ (MSMg01no375_e17.g1)
ACCAG480884AG480885
length799858
length of high quality
(start - end)		445 (49 - 493)---
definitionCHROMAT_FILE: MSMg01no375_e17.b1 PHD_FILE: MSMg01no375_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:50 2005CHROMAT_FILE: MSMg01no375_e17.g1 PHD_FILE: MSMg01no375_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATTGATTATCTAAATAATTTAATGACAACAATACATACATC
CATAGTATTTCTAATATACATGTGCTTGAATCCATCCATAGCTATATAAG
TGATAGTCCTCATTGCTATTTTTGAGAAACAGTAACTAAGGTAGTATTAG
CAAGTTAGCTCTAACATTTTAGAACATGGCCACCATTAACAAAACTCTGG
AATGCTTTTCTTTGTAAAATACAGATTTACAACGGACATTATTTTTAGTG
TTATTATAATTTAAAATGCACTTTGTTCATGAAGAAATTTCTCTCAAAAA
TCTTTTTCATTGCCTCTTTTACATCTTTGTTTCTCAGACTGTAGATGATA
GGATTCAGCATTGGAATCACAATGGTATAAAATGTGGACACAATCATGTC
ATGTTCCAAGGCATAGTTGGAACTAGGTCTCACATACATGAAAAGAATTG
TCCCATGATAAATGGACACTCCTGTAAGGTGAGAACCACATGTAGAAAAT
ATTTTTCTCCTCCCTTCTGCAGAAATCATCTTANGAATTGCAAAGAGTAT
TGAACTGTTAAAGAACTGAACAATCTCGGAGGGGGAGATTTCTCTGGAGC
CTCACCCATAAAAAAAAAAAGCTGTTTTTTTTTTGTGTTTGGACACAAAA
TAATAAGCCATGGGGGGAATTTCTAAAAAAATGGCCTATTTCCCTTTGAT
GCCCCGAAAAAAAAGAGTAAGGTGACCCCTGTTTTGTTTTGTTTATTTN

NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGGACCCCGGAAT
CAGGNGTCGGATCGGGTTCGTCGATCACGGGGCGAGGAACGATATGATAT
CGGGATTTTCCTCCCCTCCCTCCCCTCCTTTCCTTTCTCCCTCCCCCCCC
CCCCTCCCTCCCTCTCCTCCCCTCCCTCCTTCCCCCCNCCCCCCCCCCTT
TCTTCCCCCCCTCCCCTCCCCCCCCCTCCTCCTCCCCCTCCCCCTCTTTC
CCTCTTCCCTTTCTTTTTCCTCCCTCTCTTCTTCCTCCCTCTCCCTTTTT
TCCTCTCCCCCCCTTTCCCCCCTCCCTCCCCCTTCCTCCCCCTCCTCCCC
CTCCCCCCTCCTCCTCCCTCTCCTTCCCTCCTTTTCTTTCTCTCCCCCCC
TCCCCCCCCCCCTCTCTCCTCCTCCCCTCTCCCTCTTTTCCTTCACTCCT
CCTCTCCCCTTCCCCCCCCCCCCCCCTTCCCTCTCTCCCCCTCCCCCTTC
CCCCCCTTCCTCCCCTCCTTCCCCCCCTCCTTCTCCTCCCTTTCTCCTCC
CTCTCCTCCCCTCCTTTCTTTTCTCTCTCTGCTCTCCCTCCCCCCTCTCC
CCCTTTCTTCCTTCTTTCCTCCCTTCCCCCCTTTCTCTCTCTCCCCCTCC
CTCCCCCCCCTCTTCTTTCCTTCTCCCTTTCCCCTTTTTCCCCCTCTTCC
CCCCCTTTCTTCCTTTTTTCCTCCCTCCCTTCCTTCCTCCCTTCTTCTCC
CCCTCCCCCCCCCCCCTTCCCTTCTCCCTCTCTCTCCCCCCCTCCCCCCC
CCCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_e17.b1 MSMg01no375_e17.b1 CHROMAT_FILE:
MSMg01no375_e17.b1 PHD_FILE: MSMg01no375_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:50 2005
         (445 letters)



>mm_chr2_86669510_86670353
          Length = 844

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/443 (98%), Gaps = 5/443 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattg--attatctaaataatttaatgacaacaatacatacatccatagtattt 62
           |||||||||||  |||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gaattctattgaaatt---taaataatttaatgacaacaatacatacatccatagtattt 588

                                                                       
Query: 63  ctaatatacatgtgcttgaatccatccatagctatataagtgatagtcctcattgctatt 122
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctaatatacctgtgcttgaatccatccatagctatataagtgatagtcctcattgctatt 528

                                                                       
Query: 123 tttgagaaacagtaactaaggtagtattagcaagttagctctaacattttagaacatggc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tttgagaaacagtaactaaggtagtattagcaagttagctctaacattttagaacatggc 468

                                                                       
Query: 183 caccattaacaaaactctggaatgcttttctttgtaaaatacagatttacaacggacatt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 caccattaacaaaactctggaatgcttttctttgtaaaatacagatttacaacggacatt 408

                                                                       
Query: 243 atttttagtgttattataatttaaaatgcactttgttcatgaagaaatttctctcaaaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atttttagtgttattataatttaaaatgcactttgttcatgaagaaatttctctcaaaaa 348

                                                                       
Query: 303 tctttttcattgcctcttttacatctttgtttctcagactgtagatgataggattcagca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tctttttcattgcctcttttacatctttgtttctcagactgtagatgataggattcagca 288

                                                                       
Query: 363 ttggaatcacaatggtataaaatgtggacacaatcatgtcatgttccaaggcatagttgg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttggaatcacaatggtataaaatgtggacacaatcatgtcatgttccaaggcatagttgg 228

                                  
Query: 423 aactaggtctcacatacatgaaa 445
           |||||||||||||||||||||||
Sbjct: 227 aactaggtctcacatacatgaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space:   362790
Effective search space used:   362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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