BAC Information

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BAC

Clone NameMSMg01-375G07
Chromosome2 (Build37)
Map Location 65,246,269 - 65,246,718
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
Downstream geneScn3a, Scn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G07.T7 (MSMg01no375_g07.b1)MSMg01-375G07.TJ (MSMg01no375_g07.g1)
ACCAG480958AG480959
length770777
length of high quality
(start - end)
454 (52 - 505)406 (80 - 485)
definitionCHROMAT_FILE: MSMg01no375_g07.b1 PHD_FILE: MSMg01no375_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:58 2005CHROMAT_FILE: MSMg01no375_g07.g1 PHD_FILE: MSMg01no375_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACCAGTCTAACCTAGGCACCTATTCACATTCCGGAAAC
AGATCCATCCCAAGACTGTGAAACTAGAGCCATAGTTTTCCTGTTTGCTC
ATAGAGGTCGCATTGAAAGCCTCAATGTTGGCAGAGGAAAAAAAAATCTG
TGCAATCATGTCAAATCCCCTGAGTTACAGATGGACAGACCAGCACCAAT
CTAGTTAACTGATGGGCATTTCTGCTTTCTGTCATATGATGGGCATTTAA
ACACACTCTTGTGAGAAAGTGGCATGAATGTTAGTATTAACTGGGAGCTT
CCAAACTCTTCATTTTCATTTAACATATCAATAGATAGCACAAAACACCA
TGGTATGCACTGGGGAAACATGAGGTCTTTTAAACTTTTATAACAACATT
AATGGAAAACTGATGTTCAAGTATCTGTCCAAGAGTTCCACACCTAATAA
GCGGATAAGCGGAGAGTATGGCGGTCAAATTTTGTCAGTCTGGGTTCTAG
ATCTTAGCCTAAACTCTAGGCAAACCCTCCAATTCATTGAAGCCAAATAT
AGCCAGGAAGTCTATGCATAACTTTTTGGCTATGGGAGGAAAATAACAAC
TAACTTTAATGTGAAAATTGGACCAATGGGAAAATAATTTTTCTATAGAC
CCCAAAAATCTAATTTCCCTAGAAATGGCTGGCGAAGTTTTTACTATATA
AAAAGGGTTTTTATGAATTG
TTTTTCGATGAAATGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATATAGA
AAATGTGGTACATCTACACAATGGGAGTACTTACTCAGCTATTAAAAGAA
ATGAATTTATGAAATTCCTAACCAAATGGAAGGACCTGAAGGGTTCCATC
CCGAGTGGAGGTACACCTTCTCCAAGAAAACTCCCCCAAAAGGTATCCCC
CGGTTTTAACCTTTTTTAAGGCCGCACCTTCCTAAATATTTTTTAAAAAC
AGTTTTTTTTAAAATTTTGTGCTTTCTCAGTGGCTCTACCCTTTTCTCCA
TCTTTTCTATCCTCTGCGTAACCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g07.b1 MSMg01no375_g07.b1 CHROMAT_FILE:
MSMg01no375_g07.b1 PHD_FILE: MSMg01no375_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:58 2005
         (454 letters)



>mm_chr2_65246065_65246918
          Length = 854

 Score =  847 bits (438), Expect = 0.0
 Identities = 447/450 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccagtctaacctaggcacctattcacattccggaaacagatccatcccaaga 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattccaccagcctaacctaggcacctattcacattccggaaacagatccatcccaaga 595

                                                                       
Query: 65  ctgtgaaactagagccatagttttcctgtttgctcatagaggtcgcattgaaagcctcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctgtgaaactagagccatagttttcctgtttgctcatagaggtcgcattgaaagcctcaa 535

                                                                       
Query: 125 tgttggcagaggaaaaaaaaatctgtgcaatcatgtcaaatcccctgagttacagatgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgttggcagaggaaaaaaaaatctgtgcaatcatgtcaaatcccctgagttacagatgga 475

                                                                       
Query: 185 cagaccagcaccaatctagttaactgatgggcatttctgctttctgtcatatgatgggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cagaccagcaccaatctagttaactgatgggcatttctgctttctgtcatatgatgggca 415

                                                                       
Query: 245 tttaaacacactcttgtgagaaagtggcatgaatgttagtattaactgggagcttccaaa 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 414 tttaaacacactcttgtgagaaagtagcatgaatgttagtattaactgggagcttccaaa 355

                                                                       
Query: 305 ctcttcattttcatttaacatatcaatagatagcacaaaacaccatggtatgcactgggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcttcattttcatttaacatatcaatagatagcacaaaacaccatggtatgcactgggg 295

                                                                       
Query: 365 aaacatgaggtcttttaaacttttataacaacattaatggaaaactgatgttcaagtatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaacatgaggtcttttaaacttttataacaacattaatggaaaactgatgttcaagtatc 235

                                         
Query: 425 tgtccaagagttccacacctaataagcgga 454
           ||||||||||||||||||||||||| ||||
Sbjct: 234 tgtccaagagttccacacctaataaacgga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)