BAC Information

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BAC

Clone NameMSMg01-375G13
Chromosome2 (Build37)
Map Location 98,328,310 - 98,328,728
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc4c, LOC621146, LOC664974
Downstream geneLOC100042886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G13.T7 (MSMg01no375_g13.b1)MSMg01-375G13.TJ (MSMg01no375_g13.g1)
ACCAG480969AG480970
length755760
length of high quality
(start - end)
472 (77 - 548)419 (80 - 498)
definitionCHROMAT_FILE: MSMg01no375_g13.b1 PHD_FILE: MSMg01no375_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:59 2005CHROMAT_FILE: MSMg01no375_g13.g1 PHD_FILE: MSMg01no375_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTAATCTGCTTTTGTTTTTTTTTTTAAAGATTTATT
TATTTACTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGA
GGGCACCCAGTCTTGTTACAGATGATTTTGAGCCACCATGTGGTTGCTGA
GATTTGAACTCAGGACCTTCATAAGAGCAGTTGGTGCTCTTACCTGCTGA
GCCATCTCACCAGCCCTCTTTAACCTGTTTAAATTTTTTATTTATTGAAA
ATTATTTTTCCTCATATAAAAATATCTGCTATTTTTCTCCTCTCTCAACT
CTTCCCAGATCATCTGCTTCAACTCTCCTATTCAGGATCTAGCCCTTTCC
ATCTCATTTAACAAAGTATCTAAAGATAATAACAAATAAAAGAAATACAG
TAAGATAAGTAAATAAACAAACTTGAATAGGACAAATTAAACAAACAGAA
GGAAAATAAGAAAGGAAATGTCACAAGATATACNAACAAAAGCATACCTG
TTCAAGTTGGGTCTTTTGTTATATATTGTAAAGCTGAATATGGGGCCCCC
AAACCTGGTTTTCCCCAGGGATTAAAAAACCTGCCTGAACCCATAGAAAT
CCCTGGGACTTTACTCCCTAAATTTAAACCATTGGCGGAAAAAAGGGCGA
AGCGCTTTATCCCGCGCAAAAAAACAACGGGGAAAATTCCGTCTCCCGTT
CTTAA
TTTCTCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGTAGTTGGTTAGGTGT
CTGGTATCAAAGATTCTTTTCTTTCTGTTGAGGGGACATTATGTCTAATT
AGGTTACTTGCAATGAGTATTAATATTGCACATTTATGGGTACCGTTTCA
TATGGCAGAAATATTTGTCCATAGTAAATCAATTGGGGAGGGGAATTGAT
ACTTTCTTTTTTATTAAATTTTTCATTTTATTTTATTTTAATTAGGTATT
TTCTTATTTACATTTAAAATGGTTTCCCAAAAGTCCTCCATACCCTCCCC
CTACACTCCCCTACTCACCCACTCCCCCTTCTTGGTCCTGACATTCCCCT
GTACTGAAGCATACAAAGTTTGCAAGACCCATGGGCCTCTCTTTCCACTG
TTGGCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGGT
CCAGGGGTACTGGTTAGTTGATAATGTTGTTCCACCTATAGGGTTGTAGA
CCCCTTTAGTCTCCTTGGCAACTTTCTCTAGCTCTGCCCTTGGCTCCGCG
AAATTCTTCTCTCATTTTGACGGTGCATTTCCCTTTTGCTGTTTCGCTAT
TCCCCTTTCCAACTTTCTCAAAAGTATGCGACTTTTTTTTTCTTTTTCCT
CTCTTTTTTTCGTGATATTGTACATTCGCCTCTCCTCATTTCTCTTGTCT
CTCTATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g13.g1 MSMg01no375_g13.g1 CHROMAT_FILE:
MSMg01no375_g13.g1 PHD_FILE: MSMg01no375_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:00 2005
         (419 letters)



>mm_chr2_98328110_98328928
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagtagttggttaggtgtctggtatcaaagattcttttctttctgttgaggggacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagtagttggttaggtgtctggtatcaaagattcttttctttctgttgaggggacat 260

                                                                       
Query: 61  tatgtctaattaggttacttgcaatgagtattaatattgcacatttatgggtaccgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtctaattaggttacttgcaatgagtattaatattgcacatttatgggtaccgtttc 320

                                                                       
Query: 121 atatggcagaaatatttgtccatagtaaatcaattggggaggggaattgatactttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatggcagaaatatttgtccatagtaaatcaattggggaggggaattgatactttcttt 380

                                                                       
Query: 181 tttattaaatttttcattttattttattttaattaggtattttcttatttacatttaaaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttattaaaattttcattttattttattttaattaggtattttcttatttacatttaaaa 440

                                                                       
Query: 241 tggtttcccaaaagtcctccataccctccccctacactcccctactcacccactccccct 300
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tggtatcccaaaagtcctccataccctccccctacactcccctactcacccactacccct 500

                                                                       
Query: 301 tcttggtcctgacattcccctgtactgaagcatacaaagtttgcaagacccatgggcctc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttggtcctgacattcccctgtacagaagcatacaaagtttgcaagacccatgggcctc 560

                                                                      
Query: 361 tctttccactgttggccgactaggccatcttctgatacatatgcagctagagacacaag 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttccactgttggccgactaggccatcttctgatacatatgcagctagagacacaag 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)