BAC Information

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BAC

Clone NameMSMg01-375G18
Chromosome2 (Build37)
Map Location 123,578,115 - 123,764,649
singlet/doubletdoublet
Overlap genenone
Upstream geneSqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G18.T7 (MSMg01no375_g18.b1)MSMg01-375G18.TJ (MSMg01no375_g18.g1)
ACCAG480979AG480980
length790778
length of high quality
(start - end)		463 (50 - 512)481 (75 - 555)
definitionCHROMAT_FILE: MSMg01no375_g18.b1 PHD_FILE: MSMg01no375_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:00 2005CHROMAT_FILE: MSMg01no375_g18.g1 PHD_FILE: MSMg01no375_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,578,115 - 123,578,574)(123,764,169 - 123,764,649)
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAGATGTTATTTTTTAAAAGGGTATTTATTTGTGTCACAT
TGTAGACTGTGTGGTGTTTTCTTAGCCTGTTTCTCCTCTGTGGACTCTTG
GGCATGCTTCTCCTCCTCTTCAAGTGCAAATGCTTCATGAAGTCAACTCT
GGAGAGTGGGCTTAGTGCTCAGGTATTTCTTCATTTCTTCTATTTGCATC
ATCAGAGGTGTTTCTTTACTAATCAGTTATTCATCATTCATCTTTACTAC
ATAATCCAATCCCTCTATCCTGATAGTCAGTCTTCTAATTCTCCCATACT
ATTGATTCTGCTTTCATATCTTGGGTCAGGTCTCTAATTTCATTCAGCTA
TTTGTTTTTATCCCTTTACAGTGGATACAAAACTCTTTTCAGTTGTTTGA
ACAGAATTATAATCACTCTTGGGGGCTTTGTCAGAAAGTTCTTCCAAGTC
ATTCTCACTGTGGTTATGTCTATAGTATTGGTGATTTTGGAGGACCCTTC
ACTTGAATTTCATTGTTTGGGTTTCTGAACAGGGGTCTCGCAAATAATTT
ATTGGATTTCTTTTTTCTTTTTTTAAACCTCTTTTTTTCTTTTTTTTTTC
CTCCCTCCATTTCCTTCCCCTTCCCCCTTTTCTTTTTTGGGGAATAAACA
AAGGCATACATTGCCTACAAAATCATGGTGTGCTTGTTTCCCCCAACCCA
ATTCATAAATTATCCACTACTTCTTGGTATAATCCTATAA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGTACTCAAAGTCAATTAATTTTCA
GTAAAGATGTCAAGAATATACAATGGGGGAAAGGATAGACTTCTCTCTAC
AGTAGTGCTTTGGAAGCTAGACACCCATGATGGGAAATCATTTCATCTTT
AATGGACTCAGTGAAGAGCAGCCTTGTCAGTTGTCTGAAACGCTTCAGGA
TTAGAATAGGTATGCTATTTGTGCCCAGCAGTTTGCTTCCTTATATGGAA
GCATAATATACCCTAAGTTGCCTCATTATCGTCTCCAGTTACATTGAACT
AAGGTTTGCACAGCTTTTGCCAGGGAGAACCAAAAATTAAGCTAGTACAT
TAAAATAGAAACACATTTTTCTGAGTACATGTCCAATTTATTTCAGCATC
CTTTTGAATATGACTTAAAGTATAGCCAATCACATATTAATTTATTTAAC
AATATTTAGACAATATATAANAGTGTACATAATTTATATATTATGTAATT
GTTCAGAGAAATTGGAAAAGGAAAAAAGCTTACTCATTTGACTAGGTACT
CTATTAACACATTAAGATTATTTTCCTATTAAACTCAGGTTTCCTTATCA
AAAAGGGTTAAAAAAAAAATACAACCATCCTAGGGAAAACCCAGGGTTTA
AATCATTTTAAAAAAAAAGGAACAGCCAATCTTGAATTGTACTCCCGGAA
ATAATAAATAAAAAAAAATCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g18.b1 MSMg01no375_g18.b1 CHROMAT_FILE:
MSMg01no375_g18.b1 PHD_FILE: MSMg01no375_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:00 2005
         (463 letters)



>mm_chr2_123577912_123578774
          Length = 863

 Score =  859 bits (444), Expect = 0.0
 Identities = 456/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagatgttattttttaaaagggtatttatttgtgtcacattgtagactgtgt 63
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagatgttatttttaaaaagggtatttatttgtgtcacattgtagactgtgt 263

                                                                       
Query: 64  ggtgttttcttagcctgtttctcctctgtggactcttgggcatgcttctcctcctcttca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgttttcttagcctgtttctcctctgtggactcttgggcatgcttctcctcctcttca 323

                                                                       
Query: 124 agtgcaaatgcttcatgaagtcaactctggagagtgggcttagtgctcaggtatttcttc 183
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 324 agtgcaaatgcttcatgaagtcaactctggatagtaggcttagtgctcaggtatttcttc 383

                                                                       
Query: 184 atttcttctatttgcatcatcagaggtgtttctttactaatcagttattcatcattcatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttcttctatttgcatcatcagaggtgtttctttactaatcagttattcatcattcatc 443

                                                                       
Query: 244 tttactacataatccaatccctctatcctgatagtcagtcttctaattctcccatactat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttactacataatccaatccctctatcctgatagtcagtcttctaattctcccatactat 503

                                                                       
Query: 304 tgattctgctttcatatcttgggtcaggtctctaatttcattcagctatttgtttttatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgattctgctttcatatcttgggtcaggtctctaatttcattcagctatttgtttttatc 563

                                                                       
Query: 364 cctttacagtggatacaaaactcttttcagttgtttgaacagaattataatcactcttgg 423
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctttacagtggatacaaaactgttttcagttgtttgaacagaattataatcactcttgg 623

                                                   
Query: 424 gggctttgtcagaaagttcttccaagtcattctcactgtg 463
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggctttgtcagaaagttcttccaagtcattctcactgtg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_g18.g1 MSMg01no375_g18.g1 CHROMAT_FILE:
MSMg01no375_g18.g1 PHD_FILE: MSMg01no375_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:01 2005
         (481 letters)



>mm_chr2_123763866_123764746
          Length = 881

 Score =  909 bits (470), Expect = 0.0
 Identities = 478/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtactcaaagtcaattaattttcagtaaagatgtcaagaatatacaatgggggaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atgtactcaaagtcaattaattttcagtaaagatgtcaagaatatacaatgggggaaagg 725

                                                                       
Query: 61  atagacttctctctacagtagtgctttggaagctagacacccatgatgggaaatcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atagacttctctctacagtagtgctttggaagctagacacccatgatgggaaatcatttc 665

                                                                       
Query: 121 atctttaatggactcagtgaagagcagccttgtcagttgtctgaaacgcttcaggattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atctttaatggactcagtgaagagcagccttgtcagttgtctgaaacgcttcaggattag 605

                                                                       
Query: 181 aataggtatgctatttgtgcccagcagtttgcttccttatatggaagcataatataccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aataggtatgctatttgtgcccagcagtttgcttccttatatggaagcataatataccct 545

                                                                       
Query: 241 aagttgcctcattatcgtctccagttacattgaactaaggtttgcacagcttttgccagg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aagttgcctcattatcttctccagttacattgaactaaggtttgcacagcttttgccagg 485

                                                                       
Query: 301 gagaaccaaaaattaagctagtacattaaaatagaaacacatttttctgagtacatgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gagaaccaaaaattaagctagtacattaaaatagaaacacatttttctgagtacatgtcc 425

                                                                       
Query: 361 aatttatttcagcatccttttgaatatgacttaaagtatagccaatcacatattaattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 424 aatttatttcagcatccttttgaatatgacttaaagtatagccaatcacgtattaattta 365

                                                                       
Query: 421 tttaacaatatttagacaatatataanagtgtacataatttatatattatgtaattgttc 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 364 tttaacaatatttagacaatatataaaagtgtacataatttatatattatgtaattgttc 305

            
Query: 481 a 481
           |
Sbjct: 304 a 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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