BAC Information

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BAC

Clone NameMSMg01-375L04
Chromosome2 (Build37)
Map Location 132,653,433 - 132,653,747
singlet/doubletsinglet
Overlap geneMcm8
Upstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik
Downstream geneCrls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375L04.T7 (MSMg01no375_l04.b1)MSMg01-375L04.TJ (MSMg01no375_l04.g1)
ACCAG481189AG481190
length766767
length of high quality
(start - end)
319 (50 - 368)458 (81 - 538)
definitionCHROMAT_FILE: MSMg01no375_l04.b1 PHD_FILE: MSMg01no375_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:22 2005CHROMAT_FILE: MSMg01no375_l04.g1 PHD_FILE: MSMg01no375_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGTTTATTATGTGTGATGAAGTATCTGGTGGCTCAGGCT
TGAAATTGCGCTCTTTAGGAAGCTGAGGTACAAGGATAGTCACAATTTGA
AGTTAGTCTTGAGGCCTTGTCTCTAAAAGCCTCAAGTGAGGGAATAAATA
AAGTCACTGAGTTATGAATCTTGTTTAACACTCTAGTCAATTGTGTGGAA
AATGAAAATAATATATTTAATATTTGAATTTACAGGTTCTCGAAATAAGA
ATGATAAGTGCATGTTTCTTTTGTACATTGAGGCAAATTCTGTTAGCAAC
AGCAAGGGGCCGAAAGCGCAGACTGCAGAAGATGGTTGCAAGCATGGGGC
ACTGATGGAGTTCTCCCTTAAACACCTCTATGCCATCCGAGAGATCCAGG
CTGAAGAGAACCTGCTCAAGCTCGTTGTCTAGTAAGTCCTAAGTTACCTG
AAGCTTTGTTAGGTATGCATGTCATCGTGCCCTTGTTACTATTCAAAAAT
CTCTATACTGAATGCTTGGTTAATGATTCCCTAAGCTTAATCTATCTTGC
TCTGTTTTGCTTTACTTTCCGTTGAACCTTTTCCTATTTTTTCTTTTCGC
CAAATTTTAGTTTTATCTTCTTTTTACTCCCCTTTTTTCGCTTATTTTTC
ATCTATCCTTCATTTTCCTTCGTTTCCCTTTTTCTTCCTCTTTTGTTAAT
ATCCTTATCTTCTCGN
NCCCCCGATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCCAGAAATGAACCCA
CATACCTATGGTCACTTGATTTTTGACAATAAGCTAAAACAATTCAGTTG
GGGAAAGATGGCATTGTTAACAAATGATGCTGGTTCAACTGGTATAGAAA
CACGTAGAAAATGCAAATTGATCCATTCTTATCTCCCTGTACAAAGTGCA
AGTCCAATGGATCAAGGACCTCCACATAAAACCAGATACACTGAAACTAA
TAGAAGAGAAAGTGGGGGAGACCTTGAGCACATGGGCACAGGGGAAATTT
TCCTGAACAGAGCACCAATGGTTTATGTTCTAAGATCAAGAAACGACAAA
TGGGACCTCATAAAATTATAAAGCTTTTGTAAGGCAAAGGACAAAACAGC
CACCAACAGGTTGGGAAGAGATCTTTACCAATCCTACATCTGATAGAGGG
CTATTATCCAATATATACAAAGAACTCAAGAATTTAGACTTCAGAGAACC
AAATAACCCTATTTAAAAATTGGAATCAGAGTTAAACAGTGAATTCTCAA
CTTGAGGAACCTGGAATGGTCGAAAAACACCTTAATGAAATGTTCAACAT
CCTTATTCCTCCGGGGAAATGGCTAAATCCATAGGCACCTGAAAATCCTT
CCTCTCAACCCATCACAAAGGGCTTAAGAATAAAAACCTTCTTCTTAACT
TAAATGCTTTGTCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_l04.b1 MSMg01no375_l04.b1 CHROMAT_FILE:
MSMg01no375_l04.b1 PHD_FILE: MSMg01no375_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:22 2005
         (319 letters)



>mm_chr2_132653230_132653948
          Length = 719

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgtttattatgtgtgatgaagtatctggtggctcaggcttgaaattgcgct 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattccttgttcattatgtgtgatgaagtatctggtggctcaggcttgaaattgcact 263

                                                                       
Query: 64  ctttaggaagctgaggtacaaggatagtcacaatttgaagttagtcttgaggccttgtct 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 ctttaggaagctgaggtacaaggatagtcacaatttgaggttagtcttgaggccttgtct 323

                                                                       
Query: 124 ctaaaagcctcaagtgagggaataaataaagtcactgagttatgaatcttgtttaacact 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaaaagcctcaactgagggaataaataaagtcactgagttatgaatcttgtttaacact 383

                                                                       
Query: 184 ctagtcaattgtgtggaaaatgaaaataatatatttaatatttgaatttacaggttctcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctagtcaattgtgtggaaaatgaaaataatatatttaatatttgaatttacaggttctcg 443

                                                                       
Query: 244 aaataagaatgataagtgcatgtttcttttgtacattgaggcaaattctgttagcaacag 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 aaataagaatgataagtgcatgttccttttgtacattgaggcaaattctgttagcaacag 503

                          
Query: 304 caaggggccgaaagc 318
           |||||||||||||||
Sbjct: 504 caaggggccgaaagc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)