BAC Information

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BAC

Clone NameMSMg01-375O24
Chromosome2 (Build37)
Map Location 85,125,869 - 85,126,310
singlet/doubletsinglet
Overlap genenone
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
Downstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375O24.T7 (MSMg01no375_o24.b1)MSMg01-375O24.TJ (MSMg01no375_o24.g1)
ACCAG481373AG481374
length760769
length of high quality
(start - end)
486 (76 - 561)446 (80 - 525)
definitionCHROMAT_FILE: MSMg01no375_o24.b1 PHD_FILE: MSMg01no375_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:41 2005CHROMAT_FILE: MSMg01no375_o24.g1 PHD_FILE: MSMg01no375_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAGACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTATCCCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAG
TCCTCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCAGT
TTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTATTCAGGAATTTTTCCCCTGTGTCTATATTTTCGAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTTTGGTTTTATGTGGAGCTCC
TTGATCCACTTAGATTTGACCTTACTGCAAGGAGATAGGAATGGATCAAT
TCGCATTTTCTAAATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGACC
AAGTGACCATAGGTGTGCGGGTTCATTTCTGGGTCTTCAATTCTATTCCA
TTGGTCTACTTTTCTGGCGGTATACCCAAACCATGGCCGGTTTTTTTCAC
AATTGTTCTGGTATCAATGTTTTAGGTCCAGGCCGGGCGGATCCTCTTAA
AGGGTTTTTTTATCCTTGTATAAAAGCCTTGCTTTTCCCATACCTTTTTT
GTTACCCTTA
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGATCAACTCTCCTTCCTG
GTGATCCCTGGGAAATTCTTCTTTATATTGTATTGTCTTAACAGTCCCAG
CAAAAATAACAAACTTTGGTACCATGAGATCATCTCCTTCCTCAAAAGTC
CAAAACTACCTAGTCTGAATTTCATTGGCCCAGTTATATGTCCATCCCTA
AACCAATCACTGTAGCTGGAAAGAAGCAATATTTATATAAACAGAAAGTG
GAAATGGGTGGGAATCTGACTTTGGTACCATAACAAACTCCAAAGAGCTG
CAAAGGCATAAATCATGAAATTTCAGCAAACTAAAGTTTATAAACATCTA
TGAAATTCTCAGAAGAATATGAAATTCTCCTAGGAAGAATTATGGGTTGT
AATGACAAACAACAGATTCAATTAAACAGGATTGGTTTACTCAAACAGAA
AGTAAATTTTCTACTGTATTCCAATTTGGTAAAAAAAAAAAAAATTTTAA
AATAAAATATAGGCTAGGAATAAAATGTATGAGGCTTGAGGCAAAAAAAT
CCCGCCAAATTCTGGCTGTGTTCTACCAGCCTAAGAAAAAAAACAGAAAA
ATCTTTCTGGGCCCCTGCCTAAGGAAAGGAAAAGAGAGTTGGGCCTTCAA
AATCCAACCCTTTTATTCCTATATCCCCTAACCTTTCCCCAATTTAAAAA
TACTTTCCCCAAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_o24.g1 MSMg01no375_o24.g1 CHROMAT_FILE:
MSMg01no375_o24.g1 PHD_FILE: MSMg01no375_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:41 2005
         (446 letters)



>mm_chr2_85125465_85126310
          Length = 846

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   atcaactctccttcctggtgatccctgggaaattcttctttatattgtattgtcttaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 atcaactctccttcctggtgatccctgggaaattcttctttatattgtattgtcttaaca 787

                                                                       
Query: 65  gtcccagcaaaaataacaaactttggtaccatgagatcatctccttcctcaaaagtccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gtcccagcaaaaataacaaactttggtaccatgagatcatctccttcctcaaaagtccaa 727

                                                                       
Query: 125 aactacctagtctgaatttcattggcccagttatatgtccatccctaaaccaatcactgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aactacctagtctgaatttcattggcccagttatatgtccatccctaaaccaatcactgt 667

                                                                       
Query: 185 agctggaaagaagcaatatttatataaacagaaagtggaaatgggtgggaatctgacttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agctggaaagaagcaatatttatataaacagaaagtggaaatgggtgggaatctgacttt 607

                                                                       
Query: 245 ggtaccataacaaactccaaagagctgcaaaggcataaatcatgaaatttcagcaaacta 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 606 ggtaccaaaacaaactccaaagagctgcaaaggcataaatcatgaaatttcagcaaactg 547

                                                                       
Query: 305 aagtttataaacatctatgaaattctcagaagaatatgaaattctcctaggaagaattat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagtttataaacatctatgaaattctcagaagaatatgaaattctcctaggaagaattat 487

                                                                       
Query: 365 gggttgtaatgacaaacaacagattcaattaaacaggattggtttactcaaacagaaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggttgtaatgacaaacaacagattcaattaaacaggattggtttactcaaacagaaagt 427

                                 
Query: 425 aaattttctactgtattccaat 446
           ||||||||||||||||||||||
Sbjct: 426 aaattttctactgtattccaat 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)