BAC Information

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BAC

Clone NameMSMg01-375P19
Chromosome2 (Build37)
Map Location 24,329,712 - 24,562,013
singlet/doubletdoublet
Overlap genePax8, LOC433410, LOC664938, Cacna1b
Upstream geneLOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4
Downstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375P19.T7 (MSMg01no375_p19.b1)MSMg01-375P19.TJ (MSMg01no375_p19.g1)
ACCAG481411AG481412
length782788
length of high quality
(start - end)		447 (72 - 518)456 (76 - 531)
definitionCHROMAT_FILE: MSMg01no375_p19.b1 PHD_FILE: MSMg01no375_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:45 2005CHROMAT_FILE: MSMg01no375_p19.g1 PHD_FILE: MSMg01no375_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,329,712 - 24,330,158)(24,561,561 - 24,562,013)
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCG
CGGAATTCATCTGAATTATCGATTTCCTCTCACTCGGCCGGCCCAAATCG
ATCACGATGCGCCCTGGCCCCATAAATCGCTTTCCTCGCGCCCGACCTGG
CTCCATCCATCACCGCAGGCCGAAGCGCGCCTCCGCCCGCTGTCCTCCCT
GACCGTGCGACTTTGTGGCGGGCGTCCGCCGCACTCGCACTCTAGAAGTC
CTTCCCTCCATACGCCCCGGCCCGGGCTGCGAGTGAGCAGATCGGGCACG
GCTGCAGGAAGCTCAGGAGCTCTGATTGCCCAGAGCTGGGGCGCAGGTGG
GGAGGAAAATGGGGATCTTTTCGCGATTAGTCTGTGCTAGTGGAAGCCCT
GATCTTGGGCCCCCGCCTGGCTTAAACCAGGTAGGAAAGAATCTAGTGCG
CCACCGATCCCAGATCCCCAGATCCACAGACCCCAGACTCCTTTTCCCTT
GGGTAGAGATGAATGGAGGCGGAGGTCGGTTTATGGCAGCGTACGTCAGC
CCCTGTGAAATACTATTATCACCCTCAAATATGGGGTCTCTGAACCTATT
TCGCATAAATCCCTCTCGCGCTTAATGCCCGTCTTCTCCTTGTCCGCCCC
CCCCCCTTACTGCGTCCCGCTCGCGCTCCTTTCCTTCTCCCCTCATTCTC
CTTTTTGGTTCTCTTTATGCTCTTCCTATAATACATCTCTTTTTACGCCC
CCATTATTCCCCACACTCATTCTTCCCCTTTN

NCCGATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGCCACCGAGGTAATTGG
CTCAGTGACCTGTGCTCAAGAAGATGTCCTCAGAGTGGGCGTGGACATGA
AGGGGATGTCCGTAGGTGGGTGGTGCCTGTCCTGGTAGCCCACGGTTCCT
GAGCCCTCATCAAGATTTGTTCTGCAGGGTCTCCATTTGCTCGTGCCAGC
CTCAAGAGTGGGAAGACGGAGAGCTCATCGTACTTCCGGAGAAAGGAGAA
GATGTTCCGGTTCTTTATCCGGCGTATGGTGAAAGCACAGAGCTTCTACT
GGGTGGTACTGTGTGTGGTGGCCCTGAACACATTGTGTGTGGCCATGGTG
CACTATAATCAGCCTCAGCGGCTTACCACTGCACTGTGTACGTATTCTCA
TCCCGCCCCCAGGGCTCTCCCAATCACTCTACTCTGTAGCCTGGAAATCC
TGGTACTGGATACTCTGGATGCTACCCCATCTCTGCTGCATAGTCACTCG
CCTGGCCTGTGTCTGAAGCCTGAAGATCTCGTGATTTTTTATTTATCCAG
CTAGGTTCCTCATTATGAATTGTGTCTTTGATTTGAAATGAGGGCCCTCT
TTTGTGACCTTTATTTTGGGTGTTATTTTCGGCGTTTGTGGGTAATCCCA
TTCCTTGCATAACCCCTTTTTTTTACGGGATTTTTTCCTTTGCCTCCCTT
TGCCTCTTAGATTGGCCCTTATTCCCCCCTTCAGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_p19.b1 MSMg01no375_p19.b1 CHROMAT_FILE:
MSMg01no375_p19.b1 PHD_FILE: MSMg01no375_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:45 2005
         (447 letters)



>mm_chr2_24329512_24330358
          Length = 847

 Score =  810 bits (419), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcctctcactcggccggcccaaatcgatcacgatgcgccctggccccataaatcgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcctctcactcggccggcccaaatcgatcacgatgcgccctggccccataaatcgct 260

                                                                       
Query: 61  ttcctcgcgcccgacctggctccatccatcaccgcaggccgaagcgcgcctccgcccgct 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctcgctcccgacctggctccatccatcaccgcaggccgaagcgcgcctccgcccgct 320

                                                                       
Query: 121 gtcctccctgaccgtgcgactttgtggcgggcgtccgccgcactcgcactctagaagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctccctgaccgtgcgactttgtggcgggcgtccgccgcactcgcactctagaagtcc 380

                                                                       
Query: 181 ttccctccatacgccccggcccgggctgcgagtgagcagatcgggcacggctgcaggaag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctccgtacgccccggcccgggctgcgagtgagcagatcgggcacggctgcaggaag 440

                                                                       
Query: 241 ctcaggagctctgattgcccagagctggggcgcaggtggggaggaaaatggggatctttt 300
           ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ctcaggagctctgaaggcccagagctggggcgcaggtgggaaggaaaatggggatctttt 500

                                                                       
Query: 301 cgcgattagtctgtgctagtggaagccctgatcttgggcccccgcctggcttaaaccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 cgcgattagtctgtgctagtggaagccctgatcttgggcccccgcctggcttaaacctgg 560

                                                                       
Query: 361 taggaaagaatctagtgcgccaccgatcccagatccccagatccacagaccccagactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggaaagaatctagtgcgccaccgatcccagatccccagatccacagaccccagactcc 620

                                      
Query: 421 ttttcccttgggtagagatgaatggag 447
           |||||||||| ||||||||||||||||
Sbjct: 621 ttttcccttgcgtagagatgaatggag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_p19.g1 MSMg01no375_p19.g1 CHROMAT_FILE:
MSMg01no375_p19.g1 PHD_FILE: MSMg01no375_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:46 2005
         (456 letters)



>mm_chr2_24561358_24562213
          Length = 856

 Score =  830 bits (429), Expect = 0.0
 Identities = 447/453 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   caggagccaccgaggtaattggctcagtgacctgtgctcaagaagatgtcctcagagtgg 63
           |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 656 caggagtcacggaggtaattggctcagtgacctgtgctcaggaagatgtcctcagagtgg 597

                                                                       
Query: 64  gcgtggacatgaaggggatgtccgtaggtgggtggtgcctgtcctggtagcccacggttc 123
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gtgtggacatgaaggggatgtccgtaggtgggtggtgcctgtcctggtagcccacggttc 537

                                                                       
Query: 124 ctgagccctcatcaagatttgttctgcagggtctccatttgctcgtgccagcctcaagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctgagccctcatcaagatttgttctgcagggtctccatttgctcgtgccagcctcaagag 477

                                                                       
Query: 184 tgggaagacggagagctcatcgtacttccggagaaaggagaagatgttccggttctttat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgggaagacggagagctcatcgtacttccggagaaaggagaagatgttccggttctttat 417

                                                                       
Query: 244 ccggcgtatggtgaaagcacagagcttctactgggtggtactgtgtgtggtggccctgaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccggcgtatggtgaaagcacagagcttctactgggtggtactgtgtgtggtggccctgaa 357

                                                                       
Query: 304 cacattgtgtgtggccatggtgcactataatcagcctcagcggcttaccactgcactgtg 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cacactgtgtgtggccatggtgcactataatcagcctcagcggcttaccactgcactgtg 297

                                                                       
Query: 364 tacgtattctcatcccgcccccagggctctcccaatcactctactctgtagcctggaaat 423
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 296 tacgtattctcatcccgcccccagggctctcccaatcactatactctgtagcctggaaat 237

                                            
Query: 424 cctggtactggatactctggatgctaccccatc 456
           |||||||||||||||||||||||||||||||||
Sbjct: 236 cctggtactggatactctggatgctaccccatc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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