BAC Information

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BAC

Clone NameMSMg01-376C22
Chromosome2 (Build37)
Map Location 72,781,827 - 72,937,302
singlet/doubletdoublet
Overlap geneSp3, Hspe1-ps5, Gtpbp9
Upstream geneRapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
Downstream geneLOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376C22.T7 (MSMg01no376_c22.b1)MSMg01-376C22.TJ (MSMg01no376_c22.g1)
ACCAG481560AG481561
length752772
length of high quality
(start - end)		474 (47 - 520)448 (77 - 524)
definitionCHROMAT_FILE: MSMg01no376_c22.b1 PHD_FILE: MSMg01no376_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:01 2005CHROMAT_FILE: MSMg01no376_c22.g1 PHD_FILE: MSMg01no376_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,936,833 - 72,937,302)(72,781,827 - 72,782,274)
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGATTGATATCACTGACTTTGAAGTTTGTCATGGTGGCGGTTAG
CTAGTCATTACAGATGAGGTTTTTGTCCAGGATAACTTTAATTATTTGTG
ATCTGCTGAACAGTGAAAGTGGAGCGGCATTGATTGAGGCAGGTAACAAT
TGATTCTGCCTATTACATAGTCTGAATTTCTTCATCCTGTAGAATCTGTC
TGCCCTCCTCCTGTGGTCAGAGATAAGACGCACCAGTATTGTGCTTGCTT
AATCTGTGTGACTGGGTTTGTCTGCAGTGAAATTGATGTTGCTTTTCATT
TCGTATTCGCTAAGTTTGTTTGGGTTGCGGGTGGTTCTTTCCTCCCTTGC
TTTGCTCGGATTACATTTTCAGCAATAAAAGCAATATGACATCATTATGC
TTTTCATAGACACACAGGCTCAAAAAGCTAAACTCGATGTGTAATAATTC
ATTCCTTTCTATTGAATTCATAGAAGNGATGTTTATTTTTTACTGTTACG
TGTTCAACTTCTTCAAGACTGTGACATATTTTAAACATTANTGTATGCTG
AAAGTGATTAGGGAAAAAACTAATTTATTCCCGAAGAAAATAGACTGGAA
TACCAAAGTTTGCTTTTGAAGGGAAAAATTGAAGAAAAAAGAAAACCCCA
TGGAAAAAACTTTGAAAAATGGGGCCCCAATTGTAATTAAGAAAATAAAA
AG

NCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTCAGATCAACTCTTAACTACT
ATCCTAAGAACCTTGGTATTTTTTATCGCTTAAAATTAGTACACTAATAA
GACAATGCAGTTTAAAAAAAAAAGCACACTATCAGAGGATTACTTTCTAC
AATTTTGGGCATAGGTAATTTTTAGCCTCTAAAAAAACCTAACTTGTTTT
GTTGTTTAAGAATGTCTGTTACTTGTAAACAAGCTCCATTACTCATTCAC
AGAACACAGCCTGCGGATGGATCACTGACAGAAAGCAATGTAGAAAGAAC
TGAGAAAATACACTGTGTGTGAAAGTACACATAAATTAACAGTCCCACAA
GACAGACCACTCACAAAATAAACTTTAAAAAGTACTGGAAATGTTCAATC
TCACCAAGCAATAAAACAAAAACACAGTAAAATAAAATAAAATAAAAATA
GAATAAAATAGCTATTCTTGCCTATCAAACTTTAAAGGCTTTTTTTTTTT
AAAGTAAAAAGTAAGAAATGGTTACACATGGTAACTAAGACACTGCTAGT
GTTAANGGAGAAAGCAAGACAGCTATTTACCAAAAAAATTCCTTTTGACC
CCACAATATCTATTTCTGGTGCGCTTACCCCTATTAAGAAACACCCCAAC
GAAGGGGCAGGGGCATTTTGGTGGAAGTAAATTATTATTTTATCCCCCCC
CCCGGGGTTATTACCTAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_c22.b1 MSMg01no376_c22.b1 CHROMAT_FILE:
MSMg01no376_c22.b1 PHD_FILE: MSMg01no376_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:01 2005
         (474 letters)



>mm_chr2_72936629_72937502
          Length = 874

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagattgatatcactgactttgaagtttgtcatggtggcggttagctagtcatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaattcagattgatatcactgactttgaagtttgtcatggtggcggttagctagtcatta 615

                                                                       
Query: 65  cagatgaggtttttgtccaggataactttaattatttgtgatctgctgaacagtgaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagatgaggtttttgtccaggataactttaattatttgtgatctgctgaacagtgaaagt 555

                                                                       
Query: 125 ggagcggcattgattgaggcaggtaacaattgattctgcctattacatagtctgaatttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggagcggcattgattgaggcaggtaacaattgattctgcctattacatagtctgaatttc 495

                                                                       
Query: 185 ttcatcctgtagaatctgtctgccctcctcctgtggtcagagataagacgcaccagtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttcatcctgtagaatctgtctgccctcctcctgtggtcagagataagacgcaccagtatt 435

                                                                       
Query: 245 gtgcttgcttaatctgtgtgactgggtttgtctgcagtgaaattgatgttgcttttcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtgcttgcttaatctgtgtgactgggtttgtctgcagtgaaattgatgttgcttttcatt 375

                                                                       
Query: 305 tcgtattcgctaagtttgtttgggttgcgggtggttctttcctcccttgctttgctcgga 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 374 tcgtattcgctaagtttgtttgggttgcgggtgattctttcctcccttgctttgctcgga 315

                                                                       
Query: 365 ttacattttcagcaataaaagcaatatgacatcattatgcttttcatagacacacaggct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttacattttcagcaataaaagcaatatgacatcattatgcttttcatagacacacaggct 255

                                                             
Query: 425 caaaaagctaaactcgatgtgtaataattcattcctttctattgaattca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caaaaagctaaactcgatgtgtaataattcattcctttctattgaattca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_c22.g1 MSMg01no376_c22.g1 CHROMAT_FILE:
MSMg01no376_c22.g1 PHD_FILE: MSMg01no376_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:01 2005
         (448 letters)



>mm_chr2_72781627_72782474
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/448 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcagatcaactcttaactactatcctaagaaccttggtattttttatcgcttaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctcagatcaactcttaactactatcctaagaaccttggtattttttatcgcttaaaat 260

                                                                       
Query: 61  tagtacactaataagacaatgcagtttaaaaaaaaaagcacactatcagaggattacttt 120
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 261 tagtacactaataagacaatgcagtttttaaaaaaaagcacactatcagaggattacttt 320

                                                                       
Query: 121 ctacaattttgggcataggtaatttttagcctctaaaaaaacctaacttgttttgttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacaattttgggcataggtaatttttagcctctaaaaaaacctaacttgttttgttgtt 380

                                                                       
Query: 181 taagaatgtctgttacttgtaaacaagctccattactcattcacagaacacagcctgcgg 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaatgtctgttacttgtaagcaagctccattactcattcacagaacacagcctgcgg 440

                                                                       
Query: 241 atggatcactgacagaaagcaatgtagaaagaactgagaaaatacactgtgtgtgaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggatcactgacagaaagcaatgtagaaagaactgagaaaatacactgtgtgtgaaagt 500

                                                                       
Query: 301 acacataaattaacagtcccacaagacagaccactcacaaaataaactttaaaaagtact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacataaattaacagtcccacaagacagaccactcacaaaataaactttaaaaagtact 560

                                                                       
Query: 361 ggaaatgttcaatctcaccaagcaataaaacaaaaacacagtaaaataaaataaaataaa 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 ggaaatgttcaatctcaccaagcaataaaacaaacacacagtaaaataaaataaaataaa 620

                                       
Query: 421 aatagaataaaatagctattcttgccta 448
           |||||| |||||||||||||||||||||
Sbjct: 621 aatagactaaaatagctattcttgccta 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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