BAC Information

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BAC

Clone NameMSMg01-376I09
Chromosome2 (Build37)
Map Location 36,685,001 - 36,685,398
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3
Downstream geneOlfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376I09.T7 (MSMg01no376_i09.b1)MSMg01-376I09.TJ (MSMg01no376_i09.g1)
ACCAG481820AG481821
length761762
length of high quality
(start - end)		462 (45 - 506)412 (72 - 483)
definitionCHROMAT_FILE: MSMg01no376_i09.b1 PHD_FILE: MSMg01no376_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:26 2005CHROMAT_FILE: MSMg01no376_i09.g1 PHD_FILE: MSMg01no376_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTTATCTCTTTACTCCAGTTTTCAACTGGGTTATTTGGGCTA
TTGGTGTCAAGCTTCTTTAGTTCTTTATAAATTTTGGATATTAGCCCTCT
GGCATATGTAGGGTTGGTAAGGTCCTTTCCAAATTTGTAGCATGTCTTTT
TGTCCTACTGACACTGTCTTTTGCCATATAGTAGATTTTCCGTTTAAAGT
GGTTCCATTTATTGAGTGTTGATCTTAGACGCTTAGCCATTAGGTTGTAC
CAATGAGTTCAAGGCAATTCTCCACTTTCTGTTCTATCGTATTTAGTATA
TCCAGTTTTAAGTTGAGGTCTGTGATGCAACTGGACTTGCATATGGTGCA
GGGTAATAGATATGGACCTATTTGCATTTTTCTACATGCAGGCATCCAAT
TAGATCAGTACCATTTGTTGAAGATGCTTCTTTCCCCCATTGTATGTTTT
TGTCTTCTTTGTCAAATTCAGGAGCCCATACATGTGTGGGCTTATTTTGG
GGGGGTCTTCAATTTTATTCCATTCATCAATCTGTCTGTTACTATAGCAG
TGCCATGCCGTTTTTCATACTATTGGCTCTATAAAACAACTTTGAAGGCC
CGGAAGGTTGCTACCTTTGGGAAAATTTTTTAAATTGGGTAAAGGGGGGT
TAAACCAACCAAATTAAAAATAGTTCCGCCACGGCCCTGTCAAGAAATGT
GGTAAAAAATT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACATCCATATTAGCAGGCAGCAGGAAGA
GAGAGACACTAGACCAGGCTATGGCAAAAGCCTACCCATCCTGACACATT
TTTGTTCAACAAAGCCACATCTATTCAAACAAGGCCCTGCCCTCTAATCA
TTGTCAAGTAGTACCACTCTCTAATAACAAAGAATTTAAGTATATGGTCC
CCACTCTTACTTAAACACCACATATGGCAACATGGTAGGGGATTTTGCAA
GGCCACACTCTTAGATGTGTAACTACAGAAAATTAATTGCAGCTGATGAA
GGAAGAATTAATATTGTCCAGGAACAAGCCCTCCTATAGCTTATCTAATC
CCAAGTAGTTATCTTTGATCACATGTACATACTAACTCAGTCATATATAT
GTATATATATATATATGTGTGTGTGTGTGNGNGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTNNNNTNTNTTNNTTNTTNTTTTTTTNNTTTT
TTTTTTNTTTTTTTTTTTTTTNNTNTTTNTTTTTNTTNNTTTTTTTTTTT
TNNTTTNTTNNTTNNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TNTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_i09.g1 MSMg01no376_i09.g1 CHROMAT_FILE:
MSMg01no376_i09.g1 PHD_FILE: MSMg01no376_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:26 2005
         (412 letters)



>mm_chr2_36684626_36685437
          Length = 812

 Score =  704 bits (364), Expect = 0.0
 Identities = 390/402 (97%), Gaps = 9/402 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatccatattagcaggcagcaggaagagagagacactagaccaggctatggcaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tacatccatattagcaggcagcaggaagagagagacactagaccaggctatggcaaaagc 714

                                                                       
Query: 61  ctacccatcctgacacatttttgttcaacaaagccacatctattcaaacaaggccctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctacccatcctgacacatttttgttcaacaaagccacatctattcaaacaaggccctgcc 654

                                                                       
Query: 121 ctctaatcattgtcaagtagtaccactctctaataacaaagaatttaagtatatggtccc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 653 ctctaatcattgtcaagtagtaccattctctaataacaaagaatttaagtatatggtccc 594

                                                                       
Query: 181 cactcttacttaaac-accacatatggcaacatggtaggggattttgcaaggccacactc 239
           || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cattcttagttaaactaccacatatggcaacatggtaggggattttgcaaggccacactc 534

                                                                       
Query: 240 ttagatgtgtaactacagaaaattaattgcagctgatgaaggaagaattaatattgtcca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttagatgtgtaactacagaaaattaattgcagctgatgaaggaagaattaatattgtcca 474

                                                                       
Query: 300 ggaacaagccctcctatagcttatctaatcccaagtagttatctttgatcacatgtacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggaacaagccctcctatagcttatctaatcccaagtagttatctttgatcacatgtacat 414

                                                     
Query: 360 actaactcagtcatatatatgt--atatatatat--atatgt 397
           ||||||||||||||||    ||  ||||||||||  ||||||
Sbjct: 413 actaactcagtcatat----gtgcatatatatatgtatatgt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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