Query= MSMg01no376_n16.b1 MSMg01no376_n16.b1 CHROMAT_FILE:
MSMg01no376_n16.b1 PHD_FILE: MSMg01no376_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:51 2005
(557 letters)
>mm_chr2_137655490_137656446
Length = 957
Score = 944 bits (488), Expect = 0.0
Identities = 538/560 (96%), Gaps = 14/560 (2%)
Strand = Plus / Plus
Query: 5 gaattcacccaagcctagcagaacttctggatgacatgcagacttatgagtcctgaagat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattcacccaagcctagcagaacttctggatgacatgcagacttatgagtcctgaag-- 254
Query: 65 gtt-actgaatcctgagtttgtttttacatactcatgttcaatgcacaacaccacctaag 123
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 255 gttcactgaatcctgagtttgtttttacatactcatgttcaatgcacagcaccaactaag 314
Query: 124 agttagtcagacagtgaacatcttggtcccacgttgggattgctgaatgagagtctgtgg 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agttagtcagactgtgaacatcttggtcccacgttgggattgctgaatgagagtctgtgg 374
Query: 184 aaggaaagaagagacacaagtagctatcacagctgaaatttttcctgtgtgatcttcaag 243
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 375 aaggaaagaaaagacacaagtagctatcacagctgaaattttttctgtgtgatcttcaag 434
Query: 244 ctggtatagaatgtgggtcaacaaaaactgaggtcaagaattgataacttgttacaatca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctggtatagaatgtgggtcaacaaaaactgaggtcaagaattgataacttgttacaatca 494
Query: 304 ctccccccc-aatacacaggggtatacatgcatgcatgtgtgcatgcactaacacataga 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctccccccccaatacacaggggtatacatgcatgcatgtgtgcatgcactaacacataga 554
Query: 363 catgcagacactcacactcacacacacacacacacacacacacacaca--------ttct 414
||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 555 catgcagacactcacacacacacacacacacacacacacacacacacacgcacacattct 614
Query: 415 gggaaaacaatacagatataaaaaaatacagggttgtttttgtagact-taaagttgagg 473
||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct: 615 gggaaaacaatacagatataaaaaaatacagggttgtttatgtaga-tgtaaagttgaga 673
Query: 474 tatgtatgttggctctctagctattaatttgggtaaattatatgataaaagctcatatga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tatgtatgttggctctctagctattaatttgggtaaattatatgataaaagctcatatga 733
Query: 534 tatttattatagcttggctg 553
||||||||||||||||||||
Sbjct: 734 tatttattatagcttggctg 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_n16.g1 MSMg01no376_n16.g1 CHROMAT_FILE:
MSMg01no376_n16.g1 PHD_FILE: MSMg01no376_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:51 2005
(537 letters)
>mm_chr2_137789882_137790820
Length = 939
Score = 832 bits (430), Expect = 0.0
Identities = 502/526 (95%), Gaps = 3/526 (0%)
Strand = Plus / Minus
Query: 14 ctagaaagagattctgacagcatctggattttttttgttgttgttttgtttttgtttttg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 ctagaaagagattctgacagcatctggattttttttgttgttgttttgtttttgtttttg 880
Query: 74 ttttttgagacagggtttctctgtatagccctggctgtcctggagctctctttgtagacc 133
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 879 -tttttgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagacc 821
Query: 134 aggctggcctcgaactcagaaattcacctgcctctgcctcccaagtgctgggattaaagg 193
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 820 agactggcctcgaactcagaaattcacctgtctctgcctcccaagtgctgggattaaagg 761
Query: 194 cgtgcaccatcacacctggctagcatctggattttaagatgcttaaaaactct-aaaata 252
||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct: 760 agtgtgccatcacacctggctagcatctggattttaagatgcttaaaaattctaaaaaaa 701
Query: 253 ctcttaaaaactctaataatacctttgcattaaatgactaaaatcatgatttttttt-tt 311
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 700 atcttaaaaactctaataatacctttgcattaaatgactaaaattatgattttttttctt 641
Query: 312 agagcagtgaagaatcaatgcagactccaagcttttctttccaaaaaggctacaacaggc 371
||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct: 640 agaacagtgaagaatcattgcagactccaagcttttcttaccaaaaaggctacgacaagc 581
Query: 372 atttcaagcttttgaaggcttccatgatgcctgtcaaatgctaaccatctactctgtcac 431
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 580 atttcaagcttttgaaggcttgcatgatgcctgtcaaatggtaaccatctactctgtcac 521
Query: 432 taccgggatttctagttagaggagtaagggcaatatcaagcaaaaacacttaatctgacc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 520 taccgggatttctagttagaggagtaagggcaatatcaagcaaaaacacttaatctgccc 461
Query: 492 tggaaagacatcttaggaagcatctcacagtttacttgcttgtctt 537
| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttgaaaaacatcttaggaagcatctcacagtttacttgcttgtctt 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 939
Length adjustment: 10
Effective length of query: 527
Effective length of database: 929
Effective search space: 489583
Effective search space used: 489583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
