BAC Information

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BAC

Clone NameMSMg01-377A03
Chromosome2 (Build37)
Map Location 21,651,549 - 21,652,077
singlet/doubletsinglet
Overlap geneGpr158
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377A03.T7 (MSMg01no377_a03.b1)MSMg01-377A03.TJ (MSMg01no377_a03.g1)
ACCAG482190AG482191
length746734
length of high quality
(start - end)
534 (47 - 580)481 (86 - 566)
definitionCHROMAT_FILE: MSMg01no377_a03.b1 PHD_FILE: MSMg01no377_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:03 2005CHROMAT_FILE: MSMg01no377_a03.g1 PHD_FILE: MSMg01no377_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGGAATACCAGTGGTTAGGTAAAGAGAAAGAAATAGACAGGG
TAAAGGGACCATGCTTCATTAAAGCAGAAAGTCAATCAACATGATGGATA
AATGCAGAGAACCAAGCAAGGTACATTTGCTACATGTCTGAGTAGACTCA
CTTGCTATAAACTGACCAGCTTAAATAACACTCACATCATACCTCACTTT
CATCATCAACCAGTCAGAATCCAGATCATGACAGCCTCAGAGTTCTTCAC
ACATGTGCACTCAAACCTTGCTCACGGCTAGATTTCATCTGAAGGCTCTG
GATGGTAACTTCTGTACACATGAGATTAGTGCTGGGGTTCAGTCGCCTAG
GACAAGGTGGCTTTATGTCCTTGCTGGCTTTAGCTGGAGGCTTCTCTCAG
TTCCTTTCCAGAAAGAACTTCCCAACATAGCATCTTTTAAAAAGCCAGCA
AACCCGAAGTTTCATTTTTGGAAACCCATTGTGAAAGCTATGGGTTTTCT
CAATACAATACTGATGCATTTAACTGACTAAAAACTGGTATTCCCTAGGT
GTCAGACTGACTTTCAGGTCTTAATCTCCATGCTGAGTTCAGCATAAGAT
TGTTTACCCCCCCGCAAGCAGGAAGTATGAACCTTGTCCTTTTAGGAACC
ATTGCTAAGGCCTAAACCTTTATAAAAACCCGCATTTTTTCGAAAT
NCCTTTTTTTCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGACAAATGGAG
ATTCCCTATAGATACTTAAAAGAACAGCCAAGTTACACTCATATGCAAGA
ATTTACTAAGGCCTAGGAAATAGGGGGGTTGTGGTATTGCATTATTCATG
AGGCCTGCTACAGCACAACCCCCTGGTATAGGTTTCTTCACTAGGCCCAA
AGGAACAGCATAATCAGAACCCTGGTGGTGGGTTTAACAATAGACTAGCA
TTACACCTGGCTCCATTTTAAGTGGTAAACGACCTGGTCCCCCGCCATTT
TTTGATGTATGCATTCCTTTTGTTTTGTGTCACTGTAACTTGGCAGATGT
GTTCACCTGGTTTCTTGTTATTCTTCTGTATAGAAAAGTCTGGTTTTCAT
TTGGACATTACATTCAGATCCAACACACTCTCTCGTGTCTGTGTCTGTTT
GTCATTCCATTCCCACCGACTCTATGCCCATCTGTCCAAGACCCCGATTC
ACATGGATTGAGGAGGGCTCACTGAGCCTGGTCCACAAATACCATCAGGT
GCATTGTATGAAAGTTCCCCCCCAAAACTAATACAAATATTCTGTTGTGG
GAAAAATATTGAGTTTACCTAGAAATGTGAGGACTCCCATGGAGCCGGGA
CGGAGGTGAAATTTACACAAAAACTGTATGATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_a03.b1 MSMg01no377_a03.b1 CHROMAT_FILE:
MSMg01no377_a03.b1 PHD_FILE: MSMg01no377_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:03 2005
         (534 letters)



>mm_chr2_21651528_21652460
          Length = 933

 Score =  948 bits (490), Expect = 0.0
 Identities = 520/530 (98%), Gaps = 1/530 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggaataccagtggttaggtaaagagaaagaaatagacagggtaaagggacc 64
           |||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 550 gaattctttggaata-gagtggttaggtaaagggaaagaaatagacagggtaaagagacc 492

                                                                       
Query: 65  atgcttcattaaagcagaaagtcaatcaacatgatggataaatgcagagaaccaagcaag 124
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 491 atgcttcactaaagcagaaagtcaatcaacatgatggataagtgcagagaaccaagcaag 432

                                                                       
Query: 125 gtacatttgctacatgtctgagtagactcacttgctataaactgaccagcttaaataaca 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 431 gtacatttgctacatgtctgagtagaatcacttgctataaactgaccagcttaaataaca 372

                                                                       
Query: 185 ctcacatcatacctcactttcatcatcaaccagtcagaatccagatcatgacagcctcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctcacatcatacctcactttcatcatcaaccagtcagaatccagatcatgacagcctcag 312

                                                                       
Query: 245 agttcttcacacatgtgcactcaaaccttgctcacggctagatttcatctgaaggctctg 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 311 agttcttcacacatgtgcactcaaaccttgctcatggctagatttcatctgaaggctctg 252

                                                                       
Query: 305 gatggtaacttctgtacacatgagattagtgctggggttcagtcgcctaggacaaggtgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gatggtaacttctgtacacatgagattagtgctggggttcagtcgcctaggacaaggtgg 192

                                                                       
Query: 365 ctttatgtccttgctggctttagctggaggcttctctcagttcctttccagaaagaactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctttatgtccttgctggctttagctggaggcttctctcagttcctttccagaaagaactt 132

                                                                       
Query: 425 cccaacatagcatcttttaaaaagccagcaaacccgaagtttcatttttggaaacccatt 484
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 131 cccaacatggcatcttttaaaaagccagcaaacctgaagtttcatttttggaaacccatt 72

                                                             
Query: 485 gtgaaagctatgggttttctcaatacaatactgatgcatttaactgacta 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  gtgaaagctatgggttttctcaatacaatactgatgcatttaactgacta 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 933
Length adjustment: 10
Effective length of query: 524
Effective length of database: 923
Effective search space:   483652
Effective search space used:   483652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)