Query= MSMg01no377_a10.b1 MSMg01no377_a10.b1 CHROMAT_FILE:
MSMg01no377_a10.b1 PHD_FILE: MSMg01no377_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:04 2005
(479 letters)
>mm_chr2_140605058_140605936
Length = 879
Score = 874 bits (452), Expect = 0.0
Identities = 468/474 (98%), Gaps = 4/474 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgtcccggtagaagtacacacatgaaaaacacttaatatcacagtaaggtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattcactgtcccggtagaagtacacacatgaaaaacacttaatatcacagtaaggtca 617
Query: 65 tgggcaatgagacgttagtgatggccatgtgcctaagatctgatactaacaataataatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgggcaatgagacgttagtgatggccatgtgcctaagatctgatactaacaataataatt 557
Query: 125 aacaattcagagatagtagaaaagagaataagtatatcgtgcagaagaagcatatgcatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aacaattcagagatagtagaaaagagaataagtatatcgtgcagaagaagcatatgcatt 497
Query: 185 tacattacatatatacataaagacatggaaataaaggggtaatactttggaggtggaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tacattacatatatacataaagacatggaaataaaggggtaatactttggaggtggaaaa 437
Query: 245 gaagcaggggtgtatgagagattaacaacagggtgaatatgaccaaagtatattatatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaagcaggggtgtatgagagattaacaacagggtgaatatgaccaaagtatattatatac 377
Query: 305 atgtattaaaatatcttaattaaaccttttattttataattgaaaag--aaaaaacggta 362
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 376 atgtattaaaatatcttaattaaaccttttattttataattgaaaagaaaaaaaacggta 317
Query: 363 gaaggtagaaacttttataaagaatcagaagtctgaaatcaaactggtaatattgcttgc 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 316 gaaggtagaaacttttatgaagaatcagaagtctgaaatcaaactggtaatattgattgc 257
Query: 423 atttactctaattagactaacaatagggcataaatacttctttttttttttttg 476
|||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 256 atttactctaattagactaacaatagggcataaata-tt-tttttttttttttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_a10.g1 MSMg01no377_a10.g1 CHROMAT_FILE:
MSMg01no377_a10.g1 PHD_FILE: MSMg01no377_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:04 2005
(329 letters)
>mm_chr2_140429638_140430366
Length = 729
Score = 505 bits (261), Expect = e-147
Identities = 310/327 (94%), Gaps = 7/327 (2%)
Strand = Plus / Plus
Query: 1 aatcaggaataattaggtgatttttgagaatttgaagatctactgtcaggaggaaatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcaggaataattaggtgatttttgagaatttgaagatctactgtcaggaggaaatgtc 260
Query: 61 taccttgtgcatggcttggccatcaaataaaagagggtttcacttctagtcctctgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccttgtgcatggcttggccatcaaataaaagagggtttcacttctagtcctctgaaag 320
Query: 121 gataggaggagctgttctgtcttcatgcttatcattgaatttagtcattttggtagacaa 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagggggagctgttctgtcttcatgcttatcattgaatttagtcattttggtagacaa 380
Query: 181 tagtaacttgtgctgtttgggggcctcattggccaataacttatacccatacctggctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtaacttgtgctgtttgggggcctcattggccaataacttatacccatacctggctct 440
Query: 241 agggttttctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctct 300
||||||||||||||||| |||| |||| |||| |||| |||| | |||| |||| || ||
Sbjct: 441 agggttttctcctctcccctcccctcccctcccctcccctcc-c-cctcccctcccc-ct 497
Query: 301 cctctcc--tctcctctcctctcctct 325
|| |||| || |||| || |||||||
Sbjct: 498 cccctcccttcacctc-cc-ctcctct 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
