BAC Information

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BAC

Clone NameMSMg01-377E14
Chromosome2 (Build37)
Map Location 118,515,892 - 118,516,303
singlet/doubletsinglet
Overlap genePak6
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b
Downstream geneGm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377E14.T7 (MSMg01no377_e14.b1)MSMg01-377E14.TJ (MSMg01no377_e14.g1)
ACCAG482404AG482405
length873775
length of high quality
(start - end)		---412 (76 - 487)
definitionCHROMAT_FILE: MSMg01no377_e14.b1 PHD_FILE: MSMg01no377_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:25 2005CHROMAT_FILE: MSMg01no377_e14.g1 PHD_FILE: MSMg01no377_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCACAGAATTTNTNCTCNGGAGGGAACCTGTCTTCCAAATAAGGGGNG
AANNANANAATTTCCAAAAAAAAGGGGGCNAAAGCCACAAAACAAGGCCT
CTCTGCGCCGTTCTTTTTGCCCTCCCACATTCATATCTTTATTCACTGAG
TGGCGAAGATTCTACTAGATGGGGGGTATCCCAAACCCATTGCTCTACGG
ACGGCTTCAAACGTGTCCAGATGGACCTCGGCTATCCACCCCAGCGCATA
TTTTTTGACACCCCCTTCATAGCACCGCGATTGCATCCTGCTTCGCTAGT
ACACTACTTCTACCCCCCTTTTTTTTTTTCTACCAACAAAAGCGTATTCA
TCCCCCCCCGCCTATTTATTTCCCTTAATTTCCCTCCCATCCCTCCCTCC
CTCCCTTCTTCTTCTAAACACCCTCCCCCCCTCTCTACAATATCTTTCCC
CCTATCCCACCAGCGTCCGCATGCGTTTTTCCCCCTTTCACCCGCCCCGG
ACATCCTCACAATCCCAAACTCACCCCCACCATAATTCACGCCCTCGACT
TTTCCCTCCTGTCGCCCCTTATTAACACTTTTTAACTTACCCCCGTTCCT
TCCATTTACCCACCTTCTCATTTCCATTCACAAACCACGTCATAACCCTA
CTATCCCGCTATCATCCTATATATCTAACTATATGCCAATAATCAGTTCG
TTGTTATACCACCCCCGTATATAACTTTCAATTTTCCGCCTCCGTTTCCC
ATTCGTTTCCTTCTTTTCGCACGCCTTTCAGTCGTACCCCACCTCGTAAA
CCTCCCGCTTCAGTTATGCCACTCCACATTCTCATATCCGCCCCCCCTTT
ATCACTTCCCCACCCACAACCAN

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGCTATAGCCATTAGCCAAGGTCA
CTCTGGTTGGCCGTTTTGATTTCCCACATTCTTATCCTTATCCAGTGAGT
GGGGAGGGCCCCACTAGGCTTGGCATCTCTAATACTTATTGGCCTATGGA
TGTCACTAGATGTGCTTAGAGTGACCCCAGGAGGAAACCCCAGGTCATAT
ACCTTGTTCTGTGGCAGAGGGACCGGCTTGCTGCTGCTTGCCGCGCCTGT
GGCAGGAGTGGACAGGAACATGCTTCGGAAGAGCCGGTGCTTGAGGCTGC
TTTCCTGGTTCTTAGGGCTAGGGCTGCCTTCTCCACCTGGCCTGCCAATG
GCGGAGCCCACCAGGCAGGACTGAGGCCGGGCCTCTTCGGAGCTATGCTT
GGCAACCTTCACCCCACGCCTCCCTGTGGCCATAGGGGGTGAGGTACCGG
GTGGGGAACTCTGCAGGCAGGTTTTCTGTTGGCTGCCGCATCTGTTGTGA
GCACCCTCGGAATTTTTATGGTCCCACTGACTGCGCCCTGGTCCCCCCTC
TCTTTGGTAACGGCTCTGGGCTCTCTTGGTTTCTTTTCCTTTCCCCCCCC
CCGTAACTTTTCTCTTTCCCCCTCTTTTTTTCTGCCTACATTTTAGTCCT
CCATTCCCCTTTTTTTTCCTTCTTTCTATCTCCCACCTCTTTTTCTCCTA
TTTATCTTTTCTCCTCCCCATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_e14.g1 MSMg01no377_e14.g1 CHROMAT_FILE:
MSMg01no377_e14.g1 PHD_FILE: MSMg01no377_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:25 2005
         (412 letters)



>mm_chr2_118515692_118516503
          Length = 812

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctatagccattagccaaggtcactctggttggccgttttgatttcccacattcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aggctatagccattagccaaggtcactctggttggccgttttgatttcccacattcttat 553

                                                                       
Query: 61  ccttatccagtgagtggggagggccccactaggcttggcatctctaatacttattggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ccttatccagtgagtggggagggccccactaggcttggcatctctaatacttattggcct 493

                                                                       
Query: 121 atggatgtcactagatgtgcttagagtgaccccaggaggaaaccccaggtcatatacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atggatgtcactagatgtgcttagagtgaccccaggaggaaaccccaggtcatatacctt 433

                                                                       
Query: 181 gttctgtggcagagggaccggcttgctgctgcttgccgcgcctgtggcaggagtggacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gttctgtggcagagggaccggcttgctgctgcttgccgcgcctgtggcaggagtggacag 373

                                                                       
Query: 241 gaacatgcttcggaagagccggtgcttgaggctgctttcctggttcttagggctagggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaacatgcttcggaagagccggtgcttgaggctgctttcctggttcttagggctagggct 313

                                                                       
Query: 301 gccttctccacctggcctgccaatggcggagcccaccaggcaggactgaggccgggcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gccttctccacctggcctgccaatggcggagcccaccaggcaggactgaggccgggcctc 253

                                                               
Query: 361 ttcggagctatgcttggcaaccttcaccccacgcctccctgtggccataggg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttcggagctatgcttggcaaccttcaccccacgcctccctgtggccataggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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