BAC Information

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BAC

Clone NameMSMg01-377H16
Chromosome2 (Build37)
Map Location 123,965,306 - 124,153,463
singlet/doubletdoublet
Overlap gene4930517E11Rik, LOC100043360
Upstream genenone
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377H16.T7 (MSMg01no377_h16.b1)MSMg01-377H16.TJ (MSMg01no377_h16.g1)
ACCAG482550AG482551
length761766
length of high quality
(start - end)		470 (50 - 519)405 (78 - 482)
definitionCHROMAT_FILE: MSMg01no377_h16.b1 PHD_FILE: MSMg01no377_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:40 2005CHROMAT_FILE: MSMg01no377_h16.g1 PHD_FILE: MSMg01no377_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,965,306 - 123,965,771)(124,153,059 - 124,153,463)
sequence
NAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGACCTTGCTTAAGGATAAAGTTAACCAAGGGAAATTGAC
AGGTGTACTTTCTGCAATCCGACCAAGTTCTAAGTATGGCAAGACTAATT
TTTCTCTGGCTGAGCTCTAGGAATTTCATTTTGGGGGTTTTTGTAAGCTG
ACTGCCAGGTCTGCGAACACAAAGCAGACTCTGAAATGCTCTTCGCTTTG
TATCATCTGATCCCTTGCAAGTTCTCCACCTGCTTATTATAGTGTGGTTC
CAGGAATAACTGGTGGGCCTTAGAGGTTAGTTACCAGAGCTGGAGAGCAA
GCTGTCTGGATAAACACATATTTTTACTTGACCCTTAAAAAGTGCTCAAT
AGAGAGGCAGGATGCAGTTTACAAAGCTCACTGGATGAGGGTTGAGGGAT
AGAAATGTTAGTCCCAGCTCTGCTTCTGGTTCTGTGGCCTCTGCTGCTCT
AAGTGGCTTGGTTTTATGGGCCCTCTGTCAAGTGTACTGGATCATGAACT
TTGCAAGTGTGCCGCGTCAACTGAAAGCCCTCCTAAGATGCTTCCTGTTG
GCCTTGTCTGCGACACAGCCATTGCTACAGGCTTTCGGTTACTCCCTCCC
TTTTCCCCTTGTTTCCTTTCTTCCCGTCCCTTTTCTTTTCGCTTTCTGTT
CCCCACTTTTCCCCCACAAAACACTCCATCCACTCTCCCCTCCTTCTTTT
TGCCCCACTCT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACGTTTATATCTGAGCATGT
GGAAGGTCACTTTGAGTAAGTGAAGTCAAAGAATTCATTTCACACAATCA
AAAATTACAGTCATATACAGGAGTCCTGGAAGAGGAAGGCTCTTCCAGAC
ACCTGCCCGTCTCATTTATCCAACATTGTCAGAACTATAAGTACAAGGAG
TTCACCAAGGGACGAGGCTTTCTGTGAAAGGGCCAGAAGACTTGACATTT
ATAGAGGTTGTTTATGATATTTTAAATGACAGGAGGAAAGGAAGAAGGGA
TAGATAAGGAGTGTTTCTTAGAAGAAAAACCAGGCTAACATTTTGACTTC
CATCTCACTTCTAGGTAAAATAAATGTATAACTATAGTAAATTAGCAGAG
TCTTATTGCACAGACACTAACTCAGGCAGATCCAAATTGTGAAGGACTCT
TGACGTTGGGTCCCTTAAGGGGGAACACAATGTTAGGAGCCTGCCTTAAT
CTGACTTGGGATCTAAAAAAAAACCCCCTTTTTCTTTCTAGTCTAGTGGA
GAAAAAAGGCTTGGGTTGTTTTTTAACTTTCAAATGCTTTGGCGATTAAA
AGATTTGGCGCCCCCCAAGGGGTATTTCCTCTTTTATCTAAGTGTCGCCA
AAATTTTTCCCCCTTCCCCCCACCTCATTTTTGTTGTACTTATAACTAAT
ACCCTTTTTTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_h16.b1 MSMg01no377_h16.b1 CHROMAT_FILE:
MSMg01no377_h16.b1 PHD_FILE: MSMg01no377_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:40 2005
         (470 letters)



>mm_chr2_123965102_123965971
          Length = 870

 Score =  886 bits (458), Expect = 0.0
 Identities = 464/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggaccttgcttaaggataaagttaaccaagggaaattgacaggtgtactttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggaccttgcttaaggataaagttaaccaagggaaattgacaggtgtactttct 264

                                                                       
Query: 65  gcaatccgaccaagttctaagtatggcaagactaatttttctctggctgagctctaggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaatccgaccaagttctaagtatggcaagactaatttttctctggctgagctctaggaa 324

                                                                       
Query: 125 tttcattttgggggtttttgtaagctgactgccaggtctgcgaacacaaagcagactctg 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcattttgggggtttttgtaagctgactgccaggtctgcgaacacaaagcagactctg 384

                                                                       
Query: 185 aaatgctcttcgctttgtatcatctgatcccttgcaagttctccacctgcttattatagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgctcttcgctttgtatcatctgatcccttgcaagttctccacctgcttattatagt 444

                                                                       
Query: 245 gtggttccaggaataactggtgggccttagaggttagttaccagagctggagagcaagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtggttccaggaataactggtgggccttagaggttagttaccagagctggagagcaagct 504

                                                                       
Query: 305 gtctggataaacacatatttttacttgacccttaaaaagtgctcaatagagaggcaggat 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtctggacaaacacatatttttacttgacccttaaaaagtgctcaatagagaggcaggat 564

                                                                       
Query: 365 gcagtttacaaagctcactggatgagggttgagggatagaaatgttagtcccagctctgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagtttacaaagctcactggatgagggttgagggatagaaatgttagtcccagctctgc 624

                                                         
Query: 425 ttctggttctgtggcctctgctgctctaagtggcttggttttatgg 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttctggttctgtggcctctgctgctctaagtggcttggttttatgg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_h16.g1 MSMg01no377_h16.g1 CHROMAT_FILE:
MSMg01no377_h16.g1 PHD_FILE: MSMg01no377_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:40 2005
         (405 letters)



>mm_chr2_124152859_124153663
          Length = 805

 Score =  729 bits (377), Expect = 0.0
 Identities = 398/405 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacgtttatatctgagcatgtggaaggtcactttgagtaagtgaagtcaaagaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 605 caaacgtttatatctgagcatgtggaaggtcactttgagtaagtgaagtcaaataattca 546

                                                                       
Query: 61  tttcacacaatcaaaaattacagtcatatacaggagtcctggaagaggaaggctcttcca 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 545 tttcacacaatcaaaaattacagccatatacaggagtcctggaagaggaaggctcttcca 486

                                                                       
Query: 121 gacacctgcccgtctcatttatccaacattgtcagaactataagtacaaggagttcacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gacacctgcccgtctcatttatccaacattgtcagaactataagtacaaggagttcacca 426

                                                                       
Query: 181 agggacgaggctttctgtgaaagggccagaagacttgacatttatagaggttgtttatga 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agggaagaggctttctgtgaaagggccagaagacttgacatttatagaggttgtttatga 366

                                                                       
Query: 241 tattttaaatgacaggaggaaaggaagaagggatagataaggagtgtttcttagaagaaa 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 365 tattttaaatgacaggaggaaaggaagaagggatagatgaggagtgtttcttagaagaaa 306

                                                                       
Query: 301 aaccaggctaacattttgacttccatctcacttctaggtaaaataaatgtataactatag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 305 aaccaggctaacattttgacttccatctcacttctaggtaaaataaatgtataattacag 246

                                                        
Query: 361 taaattagcagagtcttattgcacagacactaactcaggcagatc 405
           |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 245 taaattagcagagtcttattgcacagacacaaactcaggcagatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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