BAC Information

Click to search

BAC

Clone NameMSMg01-377I20
Chromosome2 (Build37)
Map Location 56,356,443 - 56,356,935
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377I20.T7 (MSMg01no377_i20.b1)MSMg01-377I20.TJ (MSMg01no377_i20.g1)
ACCAG482606AG482607
length775785
length of high quality
(start - end)		496 (44 - 539)468 (74 - 541)
definitionCHROMAT_FILE: MSMg01no377_i20.b1 PHD_FILE: MSMg01no377_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:46 2005CHROMAT_FILE: MSMg01no377_i20.g1 PHD_FILE: MSMg01no377_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGTATATTCCAGGAGATGAAATATTAGAGAGAAAATGGAAGAAGT
ATCCTTTTGCAAAAGGAGATTGTTCAGACTGCTGGAACAGTGTAAAACCA
AACATCAGGAAGCCAACTGGAAAGATAACTGTTAGCAAGCACACTTTGTT
AATATATAAGAGAGGGATGCTAGCATTAAGACAAACAACATCCTAAAATT
GCTCAGAAACCAAAAGATAACCAGCAAATGAGAACTGGAATCCTACCCAT
TTGTATGTTGTGCTGCACAAATATACATGCAGGCATAACACTCATATACG
TATATGTAAAATAAGAGAAAAATCTTTAAAGGGATCAATATAATGCACTA
ATAACTAGTTTTAAATTTTCAGCTATGATGTCAAGAGACTTCTGGACAAT
GTTTTCCAAGACCAGTTTGTAAAGGTTCTTTATCAAACCATCCACGATTC
CCTCTTAAAATTCATTTCTCANAAATTCCTAACTTTTGTTAATCTTCAAG
TGTTTTTTATTAAGAGGATATGCATTAGCTTCATTTATTATATACAACTT
TTTGTGATAAGACTGCCTTCATTTTTCCAGAAAAAAAAGATCCTAAAAAT
GGCTCTCTAATGGAGAGAACATCCCCCCTACTTACTGAAATGTCCCCCCC
AATTTTTCTCGCCTTAATTTCCCCTGCCTTTTCCCCGGCTCTTATAAAAC
CCCCCTTTTCCAATCAAAAAAAAAA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTTTGATCTTATTGTATATTACAG
GTTTGTTTAAATTGTTTAAATTTTCTATATTAAATTTTTGTAGATTATGT
GAATTAAGAATTTATCTCTTCAGGGAAATGCAAATCAAAACAATATATAT
ATATATATTCTCCAGAAGATGCTCCAACTTGGAATAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGTCCCTCAACAGAGGAATGGATACAGAAAATATGGTACATTTACA
TAATGGAGTATTACTCAGCTATTTAAAACAATACATTTATGAAATTCTTA
GGCAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATC
ACAAAAGAACACACATGATATGCATTCACTGAAAAGTGGATATTAGCCCA
GAAGCTCAGAATACCCAAGATACAATTTGTAAAACACATGAAACTCACGA
AGAAGGAAGACCAAAGTGTTGATACTGCTGTCGTTTTTAGAAGGGCAAAC
AGAATACCCATGGCAAGGAGTTACAAAGTTCATAGTATAGACTGAAGGAA
TGACCATCCCTTAGACTGCCCTATCCCGGGTATCCCTCCCTATAATTAAC
CCTCCAATCCCCACTTTATTTGCCGTATGCTTTTAAACCTTTTTTGTTTG
GAACCTTATATATCTTTTTGTCATGCTCTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_i20.b1 MSMg01no377_i20.b1 CHROMAT_FILE:
MSMg01no377_i20.b1 PHD_FILE: MSMg01no377_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:46 2005
         (496 letters)



>mm_chr2_56356240_56357135
          Length = 896

 Score =  940 bits (486), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggtatattccaggagatgaaatattagagagaaaatggaagaagtatcctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggtatattccaggagatgaaatattagagagaaaatggaagaagtatcctt 263

                                                                       
Query: 64  ttgcaaaaggagattgttcagactgctggaacagtgtaaaaccaaacatcaggaagccaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgcaaaaggagattgttcagactgctggaacagtgtaaaaccaaacatcaggaagccaa 323

                                                                       
Query: 124 ctggaaagataactgttagcaagcacactttgttaatatataagagagggatgctagcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggaaagataactgttagcaagcacactttgttaatatataagagagggatgctagcat 383

                                                                       
Query: 184 taagacaaacaacatcctaaaattgctcagaaaccaaaagataaccagcaaatgagaact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taagacaaacaacatcctaaaattgctcagaaaccaaaagataaccagcaaatgagaact 443

                                                                       
Query: 244 ggaatcctacccatttgtatgttgtgctgcacaaatatacatgcaggcataacactcata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaatcctacccatttgtatgttgtgctgcacaaatatacatgcaggcataacactcata 503

                                                                       
Query: 304 tacgtatatgtaaaataagagaaaaatctttaaagggatcaatataatgcactaataact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tacgtatatgtaaaataagagaaaaatctttaaagggatcaatataatgcactaataact 563

                                                                       
Query: 364 agttttaaattttcagctatgatgtcaagagacttctggacaatgttttccaagaccagt 423
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 agttttaaattttcagctatgatgacaagagacttctggacaatgttttccaagaccagt 623

                                                                       
Query: 424 ttgtaaaggttctttatcaaaccatccacgattccctcttaaaattcatttctcanaaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 ttgtaaaggttctttatcaaaccatccacgattccctcttaaaattcatttctcaaaaat 683

                        
Query: 484 tcctaacttttgt 496
           |||||||||||||
Sbjct: 684 tcctaacttttgt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |