BAC Information

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BAC

Clone NameMSMg01-377P18
Chromosome2 (Build37)
Map Location 106,709,570 - 106,868,636
singlet/doubletdoublet
Overlap geneLOC677260, 2700007P21Rik, LOC383739
Upstream geneElp4, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15, C130023O10Rik
Downstream geneFshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377P18.T7 (MSMg01no377_p18.b1)MSMg01-377P18.TJ (MSMg01no377_p18.g1)
ACCAG482938AG482939
length767785
length of high quality
(start - end)		508 (46 - 553)421 (75 - 495)
definitionCHROMAT_FILE: MSMg01no377_p18.b1 PHD_FILE: MSMg01no377_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:21 2005CHROMAT_FILE: MSMg01no377_p18.g1 PHD_FILE: MSMg01no377_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,709,570 - 106,710,074)(106,868,214 - 106,868,636)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGATTTCAGCACCAGCTGGAACAGTCTTCTTCAAACGACAGCAC
AAATTCTCATAATTATCTCTGTCCATTTTAGTTGCGTCTCTTAGGCTTGT
CCGTTTCTGATCTGACGCTGTGCAACAGGTGCGTGGGCTTCCAGACGAGA
AGAGTCTGTGACTGTGGGAGCTGAGATGGATGAGGTCCTGAGAGGAGCTG
ACAATCCTCCCTTAATCTGCTGACTTGGTGTGAAGATTGTTGCCTTGGTG
CCCTTTCCTAGGGGATGGACAGAGATGCAAAGTACTGAAAAGACATTTCA
CCTGGCTGTTAACCATGACGTGGGCTCAGACATCTCTACAAGGCAAAGGA
AGATCTCCAGGGATGGAGGGATGGTCCTGAGGACACGGGTGTGTACACAG
CCCTGGAAACCACATTTGAGCACCAACAGATTAAGTGAAACACTTGCTAA
AATTGCCTTCCAGTGTGTACTCTTAGGAAATGGCCCATTCTGCTATATCT
AGAGCATTGGACTGACCATCCACAGAAATTTCTGCAACCAGGCCACACTC
CGCATGAACTGTTTCCGGGACTTCTGTAAGGACTGTCTAAAGCCTTTTCT
CTTTGCCTACATTGCAAGGTATCCTTTCTGAACGTTGGGTTATCATTCCC
GTGTTTTCCCCTTTTTTTTCCCCGCAATCGGTCGTACCTGTTCCCTTCTT
TCTTTTTCCCCCCCTCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGCACTGATGCTGTAAGAGCATGAG
ACAAATAGCCTTTCAGAAAAAAATCGGGAGCACGGTTATTTTGGAGTTCT
TTGCTACCTGCTGAAAATCACAGATGATTGATTTTTTTTCAGCCCATCAC
TATTTTTAGCACAGGTCACTGAATCCATGTCCTCCTTGTCGGTGCCTCTT
CTTCAGTTAGTGAAGAGAGATTTGGCAGAGTCAGCTGACAGGCCCTCTCA
TTGATTTTTAACTTTGGTGATGGAACAAAGAGAAAATCCCTCATCGAGAG
TAAGAAGATATAATATTGAAAAGCAGGAGAAACATAGAAGATGTAATGAA
CTGGAGATGAATTCATGCCCTGATTCTGTGTGTCGTAGTGAGAAAATGCC
ATGAGGGGTGTTGGCAGGAACCTAACAAGGAAGAGTTAAGTAAGCATTTC
TCCATACTTGGGTAATGAAAAGAACGAGCCTGTGGAAACAAAAGTTTGTG
TGCGTGTGTGTGTGCGCCCTTTTTCCCCTCTTTCCTTATTTTTTCTTTCC
TTCTCTCTTACTCTGTTTTTCCTAATTCCCTTTTTTCCCTTCCCACCTTT
CCCCCCCATTTCCCCTCCCCCACCCCCCCCCTCTAATTTATTATCTATTT
TTCCTTTATATCCTTTCATTTTATACCCCCTCCCCCCCCCTTCTTTGTTT
TCTTTCTTATTCTTTTTATCCCCTTTTTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_p18.b1 MSMg01no377_p18.b1 CHROMAT_FILE:
MSMg01no377_p18.b1 PHD_FILE: MSMg01no377_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:21 2005
         (508 letters)



>mm_chr2_106709367_106710274
          Length = 908

 Score =  915 bits (473), Expect = 0.0
 Identities = 497/505 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgatttcagcaccagctggaacagtcttcttcaaacgacagcacaaattctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgatttcagcaccagctggaacagtcttcttcaaacgacagcacaaattctc 263

                                                                       
Query: 64  ataattatctctgtccattttagttgcgtctcttaggcttgtccgtttctgatctgacgc 123
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 264 ataattatctctgtccattttagctgcgtctcttaggcttgtccgtttctgatctgacac 323

                                                                       
Query: 124 tgtgcaacaggtgcgtgggcttccagacgagaagagtctgtgactgtgggagctgagatg 183
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgcaacgggtgcgtgggcttccagacgagaagagtctgtgactgtgggagctgagatg 383

                                                                       
Query: 184 gatgaggtcctgagaggagctgacaatcctcccttaatctgctgacttggtgtgaagatt 243
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatgaggtcctgagagaagctcacaatcctcccttaatctgctgacttggtgtgaagatt 443

                                                                       
Query: 244 gttgccttggtgccctttcctaggggatggacagagatgcaaagtactgaaaagacattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttgccttggtgccctttcctaggggatggacagagatgcaaagtactgaaaagacattt 503

                                                                       
Query: 304 cacctggctgttaaccatgacgtgggctcagacatctctacaaggcaaaggaagatctcc 363
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 cacctggctgttaaccatgacgtgagctcagacatctctacaaggcaaaggaagatctcc 563

                                                                       
Query: 364 agggatggagggatggtcctgaggacacgggtgtgtacacagccctggaaaccacatttg 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 agggatggagggatggtcctgaggacatgggtgtgtacacagccctggaaaccacatttg 623

                                                                       
Query: 424 agcaccaacagattaagtgaaacacttgctaaaattgccttccagtgtgtactcttagga 483
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 agcaccaacagattaagtgaaacacttgctaaatttgccttccagtgtgtactcttagga 683

                                    
Query: 484 aatggcccattctgctatatctaga 508
           |||||||||||||||||||||||||
Sbjct: 684 aatggcccattctgctatatctaga 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_p18.g1 MSMg01no377_p18.g1 CHROMAT_FILE:
MSMg01no377_p18.g1 PHD_FILE: MSMg01no377_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:21 2005
         (421 letters)



>mm_chr2_106868014_106868836
          Length = 823

 Score =  783 bits (405), Expect = 0.0
 Identities = 418/423 (98%), Gaps = 2/423 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcactgatgctgtaagagcatgagacaaatagcctttcagaaaaaaatcgggagcacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aggcactgatgctgtaagagcatgagacaaatagcctttcagaaaaaaatcgggagcacg 564

                                                                       
Query: 61  gttattttggagttctttgctacctgctgaaaatcacagatgattga--ttttttttcag 118
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 563 gttattttggagttctttgctacctgctgaaaatcacagatgattgattttttttttcag 504

                                                                       
Query: 119 cccatcactatttttagcacaggtcactgaatccatgtcctccttgtcggtgcctcttct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cccatcactatttttagcacaggtcactgaatccatgtcctccttgtcggtgcctcttct 444

                                                                       
Query: 179 tcagttagtgaagagagatttggcagagtcagctgacaggccctctcattgatttttaac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagttagtgaagagagatttggcagagtcagctgacaggccctctcattgatttttaac 384

                                                                       
Query: 239 tttggtgatggaacaaagagaaaatccctcatcgagagtaagaagatataatattgaaaa 298
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcggtgatggaacaaagggaaaatccctcatcgagagtaagaagatataatattgaaaa 324

                                                                       
Query: 299 gcaggagaaacatagaagatgtaatgaactggagatgaattcatgccctgattctgtgtg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaggagaaacatagaagatgtaatgaactggagatgaattcatgccctgattctgtgtg 264

                                                                       
Query: 359 tcgtagtgagaaaatgccatgaggggtgttggcaggaacctaacaaggaagagttaagta 418
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcgtagggagaaaatgccatgaggggtgttggcaggaacctaacaaggaagagttaagta 204

              
Query: 419 agc 421
           |||
Sbjct: 203 agc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 823
Length adjustment: 9
Effective length of query: 412
Effective length of database: 814
Effective search space:   335368
Effective search space used:   335368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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