Query= MSMg01no378_d07.b1 MSMg01no378_d07.b1 CHROMAT_FILE:
MSMg01no378_d07.b1 PHD_FILE: MSMg01no378_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:38 2005
(553 letters)
>mm_chr2_102587874_102588826
Length = 953
Score = 845 bits (437), Expect = 0.0
Identities = 470/487 (96%), Gaps = 11/487 (2%)
Strand = Plus / Minus
Query: 5 gaattcattttcattcccaaatgcaaggtgctatcttctcttcctcctcactttggcaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaattcattttcattcccaaatgcaaggtgctatcttctcttcctcctcactttggcaaa 428
Query: 65 tcatgtgtgcacagctcctattaccacacagattaaaaggaaggggctgtcgggacttgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tcatgtgtgcacagctcctattaccacacagattaaaaggaaggggctgtcgggacttgg 368
Query: 125 ggattgtcatgcaaactttggagccatgattggaagagcagaaacaactagcccttgctg 184
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 367 ggattgtcatgcaaactttggaaccatgattggaagaacagaaacaactagcccttgctg 308
Query: 185 gagaaatttctagaccttttaggtactattctgaggtatacttcacctggggaattccct 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 307 gagaaatttctagaccttttaggtactattctgaggtatacctcacctggggaattccct 248
Query: 245 ccagctataaagcaaatgagggaggaagaagagtgacagaacc----------agaaatc 294
||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 247 ccagctacaaagcaaatgagggaggaagaagagtgacagaaccggaacttagaagaaatc 188
Query: 295 ctagttaactaggaagccccagttaactgccctttcagaagtcaacttattatgcttcct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctagttaactaggaagccccagttaactgccctttcagaagtcaacttattatgcttcct 128
Query: 355 tccgtttattaacccttttcaggatgataaagccagaatgttgggttcattgttagattt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tccgtttattaacccttttcaggatgataaagccagaatgttgggttcattgttagattt 68
Query: 415 t-gccaataactgccctgtcacccgtcttctctcttttcttgacatcctacttcaactgc 473
| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 67 ttgccaatacctgccctgtcacccatcttctctcttttcttgacatcctacttcaactgc 8
Query: 474 acatcag 480
|||||||
Sbjct: 7 acatcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_d07.g1 MSMg01no378_d07.g1 CHROMAT_FILE:
MSMg01no378_d07.g1 PHD_FILE: MSMg01no378_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:38 2005
(516 letters)
>mm_chr2_102427447_102428362
Length = 916
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%)
Strand = Plus / Plus
Query: 1 ttctggaaagtacttgatctcagaggatcagtcattgttattcttctctgagcttcaaag 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ttctggaaagtacttgatctcagaggattagtcattgttattcttctctgagcttcaaag 260
Query: 61 ctctttgaaagagctttggaatggaaatctggtacctccctcagtccaggatgctcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctttgaaagagctttggaatggaaatctggtacctccctcagtccaggatgctcctca 320
Query: 121 tggctagcctaggatgtttcctgagagcctgtatccatggccaggcccatgtggtgggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctagcctaggatgtttcctgagagcctgtatccatggccaggcccatgtggtgggac 380
Query: 181 ttcagcaaatctgcttcgtttgtttcttagtggggtcagaagctgtcagggtgatcagct 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagcaaatctgctttgtttgtttcttagtggggtcagaagctgtcagggtgatcagct 440
Query: 241 ttacttctgtgaatggcattcctagtttacagagactttgtttatagtgatgctgtccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacttctgtgaatggcattcctagtttacagagactttgtttatagtgatgctgtccca 500
Query: 301 accactggaccttatctgtagccagatgctagtagttttaagactccaccaaacccagag 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accactggacctaatctgtagccagatgctagtagttttaagactccaccaaacccagag 560
Query: 361 gaagagaggggttagtttatattccagagtgaatacaacagttctagaaggtgggtaaat 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagagaagggttagtttatattccagagtgaatacaacagttctagaaggtgggtaaat 620
Query: 421 tttaaagtgctggtctctactgctgatttaaatgttctgtgctactttaattggattcca 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tttaaagtgctggtctctactgctgatttaaattttctgtgctactttaattggattcca 680
Query: 481 ggaaatttaatttggggctttgtagattttttttta 516
||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaatttaatttggggctttgtagattttttttta 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
