BAC Information

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BAC

Clone NameMSMg01-378E10
Chromosome2 (Build37)
Map Location 51,466,449 - 51,466,983
singlet/doubletsinglet
Overlap geneLOC100041614
Upstream geneLOC227885, Rnd3, LOC666802, LOC666810
Downstream geneTas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378E10.T7 (MSMg01no378_e10.b1)MSMg01-378E10.TJ (MSMg01no378_e10.g1)
ACCAG483160AG483161
length763780
length of high quality
(start - end)		546 (77 - 622)450 (76 - 525)
definitionCHROMAT_FILE: MSMg01no378_e10.b1 PHD_FILE: MSMg01no378_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:43 2005CHROMAT_FILE: MSMg01no378_e10.g1 PHD_FILE: MSMg01no378_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTATATCTTGGATAACAGTTCTTTACCACACTTGCCTTT
GGCAGATATTTTCTTCTAGTTTGCAAGCTGACTTCTCAGTCTCTTGATGT
TAGCTTTCACAGAACAGAAAGTTTCTTAACTTCAATGAAGTTCACTCATT
AATTCCTTCTTTCATGGATCATGCATTTGATGTTGGATATAAAAAGTCAT
CACCATTCTCAGGGTCCCCAGGCTGGCTCCTGTGTCACAGGGAGCCTAGC
TTTAAAGCCTTCTCTGGAAGATTTGTTACAAGCTGTTGTGACTTCTGCCA
GGTAGGCTGGAAAATACCACTGAGAAGGCATTCAGTCTAAGGATTCTGAA
GCAGCAGAGAGGGAGGGAGGATGCTCGTTGCAGGGGACCTCTTGGTCACT
GTGCATCATGCATATGCATGAGGCTTTCATTCCCCTTTTAGCTTCAGGGA
GATTGGAGCACCTGCTTTGCCCTCCTGAGCCTTAATGTGAGGGAAATAAA
CATCTGAGAAATCTGGGTGTATCTGTCAGCCAAGGAGGAGCATTTTCTAA
TTGCTTCATGCTCCCTTTTCTTGCCCTACGAATTTTTTTTAATATAAGAC
TTANAAATATATCTTAGATAACAAATACATGAAAAGCCTGTTCACTCACC
AACACCGCATTTTGTTCATCTGGCTTTTACCACAAACATCCCCATAATAT
TCCCCGTAAGGCT

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTT
TTAATGAGATTATTTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATA
TATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATACTCT
CCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTA
CAAAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTCTATCTTAC
AGCACAATCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATCA
AGATATTTCGTCTATTCTTCTTACTCTTATATTTGGTATTTTTATAAAGT
CCCAGATTTTCTGGATGTTCCATGTTAGGAAATTTGAGACTGAACAGTTT
GTTTGACCAGTATATCTATTTTGTCTATTGTGTTATTCAATGCCTGAGGG
TTTCTCCTCCATCTCTTGTTTTGTGTTGATGAATTTTTGTCTCTATGGCT
CTTGTTTTATCTCACCAGGTTTATTTCTGCAATTACCCCAGTTTGGGTTT
TCTTCCCAGATTCTACTTCTATATTCCGGCCCTGAACCGGTTTATCTCAT
TTTCCTTGTTTTGGGTATTTCCGGAAAACCTCTACGGGATGCGGGGCTCC
TTTTTTCTTTTTAATTTATTTTTTTCCCCCTCCCTTTTGCATGCCCTATT
TTTCTTCCTTTTTTGCCCCCCCCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_e10.b1 MSMg01no378_e10.b1 CHROMAT_FILE:
MSMg01no378_e10.b1 PHD_FILE: MSMg01no378_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:43 2005
         (546 letters)



>mm_chr2_51466038_51466983
          Length = 946

 Score = 1019 bits (527), Expect = 0.0
 Identities = 533/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  cacacttgcctttggcagatattttcttctagtttgcaagctgacttctcagtctcttga 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 cacacttgcctttggcagatattttcttctagtttgcaagctgacttctcagtctcttga 887

                                                                       
Query: 72  tgttagctttcacagaacagaaagtttcttaacttcaatgaagttcactcattaattcct 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgttagctttcacagaacagaaagtttcttaacttcaatgaagttcactcattaattcct 827

                                                                       
Query: 132 tctttcatggatcatgcatttgatgttggatataaaaagtcatcaccattctcagggtcc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tctttcatggatcatgcatttgatgttggatataaaaagtcatcaccattctcagggtcc 767

                                                                       
Query: 192 ccaggctggctcctgtgtcacagggagcctagctttaaagccttctctggaagatttgtt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 766 ccaggctggctcctgtgtcacagggagcctagctttaaagccttctctggaagatttgcc 707

                                                                       
Query: 252 acaagctgttgtgacttctgccaggtaggctggaaaataccactgagaaggcattcagtc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acaagctgttgtgacttctgccaggtaggctggaaaataccactgagaaggcattcagtc 647

                                                                       
Query: 312 taaggattctgaagcagcagagagggagggaggatgctcgttgcaggggacctcttggtc 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 taaggattctgaagcagcagagagggagggaggatgctcgttgcaggggacctcttggtc 587

                                                                       
Query: 372 actgtgcatcatgcatatgcatgaggctttcattccccttttagcttcagggagattgga 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 actgtgcatcatgcatatgcatgaggctttcattccccttttagcttcagggagattgga 527

                                                                       
Query: 432 gcacctgctttgccctcctgagccttaatgtgagggaaataaacatctgagaaatctggg 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gcacctgctttgccctcctgagccttaatgtgagggaaataaacatctgagaaatctggg 467

                                                                  
Query: 492 tgtatctgtcagccaaggaggagcattttctaattgcttcatgctcccttttctt 546
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgtatctgtcagccaaggaggagcattttctaattgcttcatgctcccttttctt 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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