Query= MSMg01no378_e14.b1 MSMg01no378_e14.b1 CHROMAT_FILE:
MSMg01no378_e14.b1 PHD_FILE: MSMg01no378_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:44 2005
(599 letters)
>mm_chr2_143366588_143367586
Length = 999
Score = 1129 bits (584), Expect = 0.0
Identities = 595/599 (99%)
Strand = Plus / Plus
Query: 1 tcacttctacagacaataagcaacattccaatgagccctaagaaataactaattaatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacttctacagacaataagcaacattccaatgagccctaagaaataactaattaatttt 260
Query: 61 caaagtgagaaaacattatcctgtagtcctctagacctggggaagaatctaaagacagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagtgagaaaacattatcctgtagtcctctagacctggggaagaatctaaagacagtg 320
Query: 121 aagagcaacatgtttctaattttccaaagaagattaaaagaaaccttggtcctcattgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagcaacatgtttctaattttccaaagaagattaaaagaaaccttggtcctcattgtt 380
Query: 181 tagctccttcaaatactatcaaaataataggagctaaaatagaagaaacaaatttttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctccttcaaatactatcaaaataataggagctaaaatagaagaaacaaatttttcaa 440
Query: 241 cactttggaaaataagaaagcaagtacctttgtttctgaagagttgattagtctgagtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactttggaaaataagaaagcaagtacctttgtttctgaagagttgattagtctgagtta 500
Query: 301 atctgaggatttgttgatgaagttgcaaagaaaacaccacctgacattctctggactgac 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 atctgaggatttgttgatgaagttgcaaagaaaacaccacctaacattctctggactgac 560
Query: 361 tgctttcccgacagtaaaatgcttggtaaattgccatgcattcaccccactgtattaatt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tgctttcccgacagtaaaatgcttggtaaattgccatgcgttcaccccactgtattaatt 620
Query: 421 taagatgacttanaaaacaaatgccatctgaagattctcagcttaaggaaaaatagactt 480
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagatgacttagaaaacaaacgccatctgaagattctcagcttaaggaaaaatagactt 680
Query: 481 agatcacttaaggaaaaacacattaaattggtaaaaagatataggaatttgagagaagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agatcacttaaggaaaaacacattaaattggtaaaaagatataggaatttgagagaagag 740
Query: 541 cacccacatgccagtaatgtgtaggcatgagtataacctgcgcatgtgagttaaatgta 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacccacatgccagtaatgtgtaggcatgagtataacctgcgcatgtgagttaaatgta 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_e14.g1 MSMg01no378_e14.g1 CHROMAT_FILE:
MSMg01no378_e14.g1 PHD_FILE: MSMg01no378_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:44 2005
(492 letters)
>mm_chr2_143467044_143467943
Length = 900
Score = 897 bits (464), Expect = 0.0
Identities = 488/500 (97%), Gaps = 8/500 (1%)
Strand = Plus / Minus
Query: 1 aatgtaacactgccatttgtgatcttttgcaagttttttggggggcaccgcaggttaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aatgtaacactgccatttgtgatcttttgcaagttttttggggggcaccgcaggttaata 641
Query: 61 gccgcagtacatcagtgccttccgggttcgggtgggtttgggtgtgaggatctggcctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gccgcagtacatcagtgccttccgggttcgggtgggtttgggtgtgaggatctggcctgt 581
Query: 121 ttctctctggaaagagcca------cttcagtggaaacaaagcacatcattagtcattac 174
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 580 ttctctctggaaagagccacttagtcttcagtggaaacaaagcacatcattagtcattac 521
Query: 175 tctctcggctgaaaaatggagtttccagagtttgccttgtgcaagcgagctattcatttg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tctctcggctgaaaaatggagtttccagagtttgccttgtgcaagcgagctattcatttg 461
Query: 235 cagtcaggtatttatgatttgtgtctcatttatctgtgcggaagtgctcagtaagtgggc 294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cagtcaggtacacatgatttgtgtctcatttatctgtgcggaagtgctcagtaagtgggc 401
Query: 295 ttgggcctggagttttcaatgggctggccaaacaaacatccacccttttatctttcctct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgggcctggagttttcaatgggctggccaaacaaacatccacccttttatctttcctct 341
Query: 355 gtgcgcatcaacattaatgtgaggctgccattagcagtagttgactcgctgggagaaacc 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 gtgcgcatcaacattaatgtgaggctgccattagcagtagttgactcgctgggataaacc 281
Query: 415 ttagaaattatggcccattgttgcctgattcgcccagcagtgacccagaaagcaacttgg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttagaaattatggcccattgttgcctgattcgcccagcagtgacccagaaagcaacttgg 221
Query: 475 ggggg--tgtctctcttctc 492
||||| |||||||||||||
Sbjct: 220 gggggggtgtctctcttctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 900
Length adjustment: 10
Effective length of query: 482
Effective length of database: 890
Effective search space: 428980
Effective search space used: 428980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
