BAC Information

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BAC

Clone NameMSMg01-378I16
Chromosome2 (Build37)
Map Location 140,102,821 - 140,103,184
singlet/doubletsinglet
Overlap geneSel1l2
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik
Downstream gene2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378I16.T7 (MSMg01no378_i16.b1)MSMg01-378I16.TJ (MSMg01no378_i16.g1)
ACCAG483364AG483365
length785771
length of high quality
(start - end)		520 (49 - 568)518 (75 - 592)
definitionCHROMAT_FILE: MSMg01no378_i16.b1 PHD_FILE: MSMg01no378_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:03 2005CHROMAT_FILE: MSMg01no378_i16.g1 PHD_FILE: MSMg01no378_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGACATTCTCGCTTCCAGTTTGTTCCAGTAGAACTCAAATG
CCTAACTGGATGTCTTTCTGCCTGGGGCTCTTTTCCCTTAACCTATTCTA
CTCAAGTCTGCCAACTGGAAATGTCTCTTAGCATCAGATAGACTGTGCAT
AAGATTAAGTCTAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGAT
GGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGCCTC
CAAATGATGACACCATTACATATACTAGCAAGCGTTTGTTGCAAGGACCA
TGATATAGCTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACAGAA
GTGGATGCTCACAGTCAACTATTGGATGGATCACAGGGCCCCCAATGGAG
GCGCTAGAGAAAGTATCCAAGGAGCTAAAAAGATCTGCAACCCTGTATGT
GCAACAATATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT
ATGTATCAAAAGATGGCCTAGTCGGCCATCATTGGACAGGCAAACTTTAT
ATGCCCTAGTATAGGGGAACGCCAGGGNCAAAAAATGGGAATGGGTGAAG
TAGGGAAGTGGGCGGTNNNTTTNTNNTTNTNNTNTNNNNTTTCTTTTTTT
TTTTTTTTTTTTTCCTNTTTTCCCCCCATTNCCTTCCCTATTNTCTCCTC
TCTCTTTCCTNTTNCTCTCCTCTATTNTTCTCCCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGACGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAAGATTCCCAAGATATAAGGGACAATTTGCT
AAACCTTGAAACTCTAGAAAATTGAAGACCTGAATGTGGACACTATGCCC
CTCCTTAAAATAGGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_i16.b1 MSMg01no378_i16.b1 CHROMAT_FILE:
MSMg01no378_i16.b1 PHD_FILE: MSMg01no378_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:03 2005
         (520 letters)



>mm_chr2_140102821_140103740
          Length = 920

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgacattctcgcttccagtttgttccagtagaactcaaatgcctaactggatg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaattcttgacattctggcttccagtttgttccagtagaactcaaatgcctaactggatg 305

                                                                       
Query: 65  tctttctgcctggggctcttttcccttaacctattctactcaagtctgccaactggaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctttctgcctggggctcttttcccttaacctattctactcaagtctgccaactggaaat 245

                                                                       
Query: 125 gtctcttagcatcagatagactgtgcataagattaagtctagttacagagacaaagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtctcttagcatcagatagactgtgcataagattaagtctagttacagagacaaagtttg 185

                                                                       
Query: 185 gagctgagacaaaaggatggaccatctagagactgccatatccagggatccatcccataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gagctgagacaaaaggatggaccatctagagactgccatatccagggatccatcccataa 125

                                                                       
Query: 245 ttagcctccaaatgatgacaccattacatatactagcaagcgtttgttgcaaggaccatg 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124 ttagcctccaaatgatgacaccattacatacactagcaagcgtttgttgcaaggaccatg 65

                                                                       
Query: 305 atatagctgtctcttgtgagactaggccggggcctagcaaacacagaagtggatgctcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  atatagctgtctcttgtgagactaggccggggcctagcaaacacagaagtggatgctcac 5

               
Query: 365 agtc 368
           ||||
Sbjct: 4   agtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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